RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 CMTR2Q8IYT2 770 aaKnown RBP4.44□□□□□ -1.7
SPG11-222ENST00000560435 BOLLQ8N9W6 283 aaKnown RBP4.44□□□□□ -1.7
SPG11-222ENST00000560435 SIMC1Q8NDZ2 872 aa4.44□□□□□ -1.7
SPG11-222ENST00000560435 CAVIN3Q969G5 261 aa4.44□□□□□ -1.7
SPG11-222ENST00000560435 CHST2Q9Y4C5 530 aa4.44□□□□□ -1.7
SPG11-222ENST00000560435 COL11A2P13942 1736 aaPredicted RBP4.43□□□□□ -1.7
SPG11-222ENST00000560435 PROB1E7EW31 1015 aa4.43□□□□□ -1.7
SPG11-222ENST00000560435 MAFGO15525 162 aa4.43□□□□□ -1.7
SPG11-222ENST00000560435 KCNQ2O43526 872 aa4.43□□□□□ -1.7
SPG11-222ENST00000560435 CFBP00751 764 aa4.43□□□□□ -1.7
SPG11-222ENST00000560435 CYP17A1P05093 508 aa4.43□□□□□ -1.7
SPG11-222ENST00000560435 BLOC1S1P78537 153 aa4.43□□□□□ -1.7
SPG11-222ENST00000560435 FOXI1Q12951 378 aa4.43□□□□□ -1.7
SPG11-222ENST00000560435 MICALCLQ6ZW33 695 aa4.43□□□□□ -1.7
SPG11-222ENST00000560435 KANSL1Q7Z3B3 1105 aa4.43□□□□□ -1.7
SPG11-222ENST00000560435 HDGFL2Q7Z4V5 671 aaPredicted RBP4.43□□□□□ -1.7
SPG11-222ENST00000560435 LRFN3Q9BTN0 628 aa4.43□□□□□ -1.7
SPG11-222ENST00000560435 LSM14BQ9BX40 385 aaKnown RBP4.43□□□□□ -1.7
SPG11-222ENST00000560435 EPC1Q9H2F5 836 aa4.43□□□□□ -1.7
SPG11-222ENST00000560435 MTG2Q9H4K7 406 aa4.43□□□□□ -1.7
SPG11-222ENST00000560435 PCIF1Q9H4Z3 704 aa4.43□□□□□ -1.7
SPG11-222ENST00000560435 ING3Q9NXR8 418 aa4.43□□□□□ -1.7
SPG11-222ENST00000560435 FRMD4BQ9Y2L6 1034 aa4.43□□□□□ -1.7
SPG11-222ENST00000560435 POLR2AP24928 1970 aaKnown RBP4.43□□□□□ -1.7
SPG11-222ENST00000560435 KDM2BQ8NHM5 1336 aa4.43□□□□□ -1.7
SPG11-222ENST00000560435 PIPSLA2A3N6 862 aa4.42□□□□□ -1.7
SPG11-222ENST00000560435 NDUFA10O95299 355 aa4.42□□□□□ -1.7
SPG11-222ENST00000560435 GAAP10253 952 aa4.42□□□□□ -1.7
SPG11-222ENST00000560435 CXCR5P32302 372 aa4.42□□□□□ -1.7
SPG11-222ENST00000560435 MRPL49Q13405 166 aaKnown RBP4.42□□□□□ -1.7
SPG11-222ENST00000560435 FGD2Q7Z6J4 655 aa4.42□□□□□ -1.7
SPG11-222ENST00000560435 PLXDC1Q8IUK5 500 aa4.42□□□□□ -1.7
SPG11-222ENST00000560435 UNC5BQ8IZJ1 945 aa4.42□□□□□ -1.7
SPG11-222ENST00000560435 SOX7Q9BT81 388 aa4.42□□□□□ -1.7
SPG11-222ENST00000560435 CCDC85CA6NKD9 419 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 DIRC3C9JPN6 131 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 OPHN1O60890 802 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 ALDH1A2O94788 518 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 STK10O94804 968 aaKnown RBP4.41□□□□□ -1.7
SPG11-222ENST00000560435 ZSCAN20P17040 1043 aaPredicted RBP4.41□□□□□ -1.7
SPG11-222ENST00000560435 PTH2RP49190 550 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 GUCY1B3Q02153 619 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 ADCY2Q08462 1091 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 ADCY1Q08828 1119 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 ABHD17BQ5VST6 288 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 CHST14Q8NCH0 376 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 OR5M3Q8NGP4 307 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 PPP1R14CQ8TAE6 165 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 SLC9A6Q92581 669 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 IL17RAQ96F46 866 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 SPATA5L1Q9BVQ7 753 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 MRPL4Q9BYD3 311 aaKnown RBP4.41□□□□□ -1.7
SPG11-222ENST00000560435 ALG13Q9NP73 1137 aaKnown RBP4.41□□□□□ -1.7
SPG11-222ENST00000560435 TESQ9UGI8 421 aaKnown RBP4.41□□□□□ -1.7
SPG11-222ENST00000560435 CLCA2Q9UQC9 943 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 HDAC5Q9UQL6 1122 aa4.41□□□□□ -1.7
SPG11-222ENST00000560435 TNPO3Q9Y5L0 923 aaKnown RBP4.41□□□□□ -1.7
SPG11-222ENST00000560435 M0R2C6 588 aa4.4□□□□□ -1.71
SPG11-222ENST00000560435 LEFTY2O00292 366 aa4.4□□□□□ -1.71
SPG11-222ENST00000560435 CASRP41180 1078 aa4.4□□□□□ -1.71
SPG11-222ENST00000560435 GPRIN1Q7Z2K8 1008 aa4.4□□□□□ -1.71
SPG11-222ENST00000560435 DDX53Q86TM3 631 aaKnown RBP4.4□□□□□ -1.71
SPG11-222ENST00000560435 KIAA1958Q8N8K9 716 aa4.4□□□□□ -1.71
SPG11-222ENST00000560435 PIK3C3Q8NEB9 887 aa4.4□□□□□ -1.71
SPG11-222ENST00000560435 HIST1H2AHQ96KK5 128 aa4.4□□□□□ -1.71
SPG11-222ENST00000560435 HIST1H2AJQ99878 128 aa4.4□□□□□ -1.71
SPG11-222ENST00000560435 NOL10Q9BSC4 688 aaKnown RBP4.4□□□□□ -1.71
SPG11-222ENST00000560435 TRIM39Q9HCM9 518 aa4.4□□□□□ -1.71
SPG11-222ENST00000560435 ARHGEF17Q96PE2 2063 aaPredicted RBP4.39□□□□□ -1.71
SPG11-222ENST00000560435 MYADML2A6NDP7 307 aa4.39□□□□□ -1.71
SPG11-222ENST00000560435 H7C1D1 291 aa4.39□□□□□ -1.71
SPG11-222ENST00000560435 ESRRBO95718 433 aa4.39□□□□□ -1.71
SPG11-222ENST00000560435 PTX3P26022 381 aaPredicted RBP4.39□□□□□ -1.71
SPG11-222ENST00000560435 GZMKP49863 264 aa4.39□□□□□ -1.71
SPG11-222ENST00000560435 FOXF2Q12947 444 aa4.39□□□□□ -1.71
SPG11-222ENST00000560435 ZNF174Q15697 407 aa4.39□□□□□ -1.71
SPG11-222ENST00000560435 LCE1AQ5T7P2 110 aa4.39□□□□□ -1.71
SPG11-222ENST00000560435 KIAA1841Q6NSI8 718 aa4.39□□□□□ -1.71
SPG11-222ENST00000560435 TIGD7Q6NT04 549 aaPredicted RBP4.39□□□□□ -1.71
SPG11-222ENST00000560435 PHYKPLQ8IUZ5 450 aa4.39□□□□□ -1.71
SPG11-222ENST00000560435 C7orf31Q8N865 590 aa4.39□□□□□ -1.71
SPG11-222ENST00000560435 CPEB3Q8NE35 698 aaKnown RBP4.39□□□□□ -1.71
SPG11-222ENST00000560435 SIRPGQ9P1W8 387 aa4.39□□□□□ -1.71
SPG11-222ENST00000560435 CCDC163A0A0D9SF12 145 aa4.38□□□□□ -1.71
SPG11-222ENST00000560435 PRR5-ARHGAP8B1AHC4 643 aa4.38□□□□□ -1.71
SPG11-222ENST00000560435 B4E1Z4 1266 aa4.38□□□□□ -1.71
SPG11-222ENST00000560435 GLRX3O76003 335 aaKnown RBP4.38□□□□□ -1.71
SPG11-222ENST00000560435 PRPF6O94906 941 aaKnown RBP4.38□□□□□ -1.71
SPG11-222ENST00000560435 DDX6P26196 483 aaKnown RBP eCLIP4.38□□□□□ -1.71
SPG11-222ENST00000560435 PLA2G5P39877 138 aa4.38□□□□□ -1.71
SPG11-222ENST00000560435 RNASE9P60153 205 aaKnown RBP4.38□□□□□ -1.71
SPG11-222ENST00000560435 NHLH1Q02575 133 aa4.38□□□□□ -1.71
SPG11-222ENST00000560435 NHLH2Q02577 135 aa4.38□□□□□ -1.71
SPG11-222ENST00000560435 MPP3Q13368 585 aa4.38□□□□□ -1.71
SPG11-222ENST00000560435 SP5Q6BEB4 398 aaPredicted RBP4.38□□□□□ -1.71
SPG11-222ENST00000560435 ZCCHC8Q6NZY4 707 aaKnown RBP4.38□□□□□ -1.71
SPG11-222ENST00000560435 DRICH1Q6PGQ1 229 aaPredicted RBP4.38□□□□□ -1.71
SPG11-222ENST00000560435 SRRM1Q8IYB3 904 aaKnown RBP4.38□□□□□ -1.71
SPG11-222ENST00000560435 CAGE1Q8TC20 777 aa4.38□□□□□ -1.71
SPG11-222ENST00000560435 ANKS1AQ92625 1134 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms