RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 PAN2Q504Q3 1202 aaKnown RBP11.27□□□□□ -0.61
USP3-207ENST00000558218 SPOUT1Q5T280 376 aaKnown RBP11.27□□□□□ -0.61
USP3-207ENST00000558218 PLA2G4FQ68DD2 849 aa11.27□□□□□ -0.61
USP3-207ENST00000558218 FERMT3Q86UX7 667 aa11.27□□□□□ -0.61
USP3-207ENST00000558218 LRRC43Q8N309 656 aa11.27□□□□□ -0.61
USP3-207ENST00000558218 CNNM3Q8NE01 707 aa11.27□□□□□ -0.61
USP3-207ENST00000558218 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.27□□□□□ -0.61
USP3-207ENST00000558218 POF1BQ8WVV4 589 aa11.27□□□□□ -0.61
USP3-207ENST00000558218 PGBD4Q96DM1 585 aa11.27□□□□□ -0.61
USP3-207ENST00000558218 MTRQ99707 1265 aa11.27□□□□□ -0.61
USP3-207ENST00000558218 SH2D3AQ9BRG2 576 aa11.27□□□□□ -0.61
USP3-207ENST00000558218 POLR3CQ9BUI4 534 aaPredicted RBP11.27□□□□□ -0.61
USP3-207ENST00000558218 CWH43Q9H720 699 aa11.27□□□□□ -0.61
USP3-207ENST00000558218 NOL7Q9UMY1 257 aaKnown RBP11.27□□□□□ -0.61
USP3-207ENST00000558218 DTNBO60941 627 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 FGF18O76093 207 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 SRGAP2CP0DJJ0 459 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 FGFR1P11362 822 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 MCM7P33993 719 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 GATMP50440 423 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 KRT17Q04695 432 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 LAMTOR4Q0VGL1 99 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 ADAM15Q13444 863 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 GNL2Q13823 731 aaKnown RBP11.26□□□□□ -0.61
USP3-207ENST00000558218 TFDP1Q14186 410 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 PDIA5Q14554 519 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 EMC2Q15006 297 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 TWF2Q6IBS0 349 aaKnown RBP11.26□□□□□ -0.61
USP3-207ENST00000558218 CATSPER4Q7RTX7 472 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 MRPL10Q7Z7H8 261 aaKnown RBP11.26□□□□□ -0.61
USP3-207ENST00000558218 NOSTRINQ8IVI9 506 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 COLGALT1Q8NBJ5 622 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 ERMNQ8TAM6 284 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 TMEM143Q96AN5 459 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 NLRP4Q96MN2 994 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 NACC1Q96RE7 527 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 CDCA3Q99618 268 aaPredicted RBP11.26□□□□□ -0.61
USP3-207ENST00000558218 NFKBIZQ9BYH8 718 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 NGRNQ9NPE2 291 aaKnown RBP11.26□□□□□ -0.61
USP3-207ENST00000558218 AGPAT5Q9NUQ2 364 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 FAM105AQ9NUU6 356 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 RNF19AQ9NV58 838 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 KANSL3Q9P2N6 904 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 STK39Q9UEW8 545 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 PRKAG3Q9UGI9 489 aa11.26□□□□□ -0.61
USP3-207ENST00000558218 DBR1Q9UK59 544 aaKnown RBP11.26□□□□□ -0.61
USP3-207ENST00000558218 LAD1O00515 517 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 OR52Z1P0C646 297 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 SPATA31C1P0DKV0 1188 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 DNAJB1P25685 340 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 RPA1P27694 616 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 ARL2P36404 184 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 LTBRP36941 435 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 ALDH7A1P49419 539 aaKnown RBP11.25□□□□□ -0.61
USP3-207ENST00000558218 RARRES1P49788 294 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 PTENP60484 403 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 CYP4A11Q02928 519 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 HYAL1Q12794 435 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 BMS1Q14692 1282 aaKnown RBP11.25□□□□□ -0.61
USP3-207ENST00000558218 SWT1Q5T5J6 900 aaKnown RBP11.25□□□□□ -0.61
USP3-207ENST00000558218 PTCRAQ6ISU1 281 aaPredicted RBP11.25□□□□□ -0.61
USP3-207ENST00000558218 KCNT2Q6UVM3 1135 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 LRRC55Q6ZSA7 311 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 CATSPER3Q86XQ3 398 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 KSR1Q8IVT5 923 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 FAM178BQ8IXR5 827 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 THNSL1Q8IYQ7 743 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 EFHBQ8N7U6 833 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 MICAL1Q8TDZ2 1067 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 MRPS27Q92552 414 aaKnown RBP11.25□□□□□ -0.61
USP3-207ENST00000558218 CCDC51Q96ER9 411 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 ZNF668Q96K58 619 aaPredicted RBP11.25□□□□□ -0.61
USP3-207ENST00000558218 ZNF558Q96NG5 402 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 TMEM60Q9H2L4 133 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 UBN1Q9NPG3 1134 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 TLR9Q9NR96 1032 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 CLDND1Q9NY35 253 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 SPG21Q9NZD8 308 aa11.25□□□□□ -0.61
USP3-207ENST00000558218 PIN4Q9Y237 131 aaKnown RBP11.25□□□□□ -0.61
USP3-207ENST00000558218 WNT7AO00755 349 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 FSCN2O14926 492 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 ZBTB39O15060 712 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 CSDE1O75534 798 aaKnown RBP11.24□□□□□ -0.61
USP3-207ENST00000558218 ATF7P17544 494 aaPredicted RBP11.24□□□□□ -0.61
USP3-207ENST00000558218 ATP2B1P20020 1258 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 FGFR4P22455 802 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 HOXA11P31270 313 aaPredicted RBP11.24□□□□□ -0.61
USP3-207ENST00000558218 TECP42680 631 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 GUCY1B3Q02153 619 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 ZNF174Q15697 407 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 CLLU1OSQ5K130 101 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 TTC38Q5R3I4 469 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 HAUS3Q68CZ6 603 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 GLB1LQ6UWU2 654 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 TMEM184AQ6ZMB5 413 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 KCTD17Q8N5Z5 321 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 RNF149Q8NC42 400 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 MCPH1Q8NEM0 835 aa11.24□□□□□ -0.61
USP3-207ENST00000558218 CCDC43Q96MW1 224 aaKnown RBP11.24□□□□□ -0.61
USP3-207ENST00000558218 C1QTNF1Q9BXJ1 281 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms