RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 BTBD7Q9P203 1132 aa17.71■□□□□ 0.43
COL4A1-204ENST00000543140 PTPRFP10586 1907 aa17.71■□□□□ 0.42
COL4A1-204ENST00000543140 KCNK3O14649 394 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 MCM3P25205 808 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 ANXA13P27216 316 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 ITIH3Q06033 890 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 STXBP2Q15833 593 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 EPC2Q52LR7 807 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 MAP4K3Q8IVH8 894 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 LRRC57Q8N9N7 239 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 TPCN2Q8NHX9 752 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 ELMO3Q96BJ8 720 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 XPNPEP1Q9NQW7 623 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 TAS2R14Q9NYV8 317 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 USP20Q9Y2K6 914 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 NFASCO94856 1347 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 SBF1O95248 1867 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 N4BP1O75113 896 aaKnown RBP17.7■□□□□ 0.42
COL4A1-204ENST00000543140 MXI1P50539 228 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 GYS2P54840 703 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 RPS6KA1Q15418 735 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 SH3D19Q5HYK7 790 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 SLC39A4Q6P5W5 647 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 CCNI2Q6ZMN8 369 aaPredicted RBP17.7■□□□□ 0.42
COL4A1-204ENST00000543140 GADL1Q6ZQY3 521 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 SLC20A1Q8WUM9 679 aa17.7■□□□□ 0.42
COL4A1-204ENST00000543140 TNFAIP3P21580 790 aa17.69■□□□□ 0.42
COL4A1-204ENST00000543140 MIS18BP1Q6P0N0 1132 aa17.69■□□□□ 0.42
COL4A1-204ENST00000543140 SLC17A8Q8NDX2 589 aa17.69■□□□□ 0.42
COL4A1-204ENST00000543140 TMEM174Q8WUU8 243 aa17.69■□□□□ 0.42
COL4A1-204ENST00000543140 POMGNT1Q8WZA1 660 aa17.69■□□□□ 0.42
COL4A1-204ENST00000543140 TAF4BQ92750 862 aa17.69■□□□□ 0.42
COL4A1-204ENST00000543140 SYT11Q9BT88 431 aa17.69■□□□□ 0.42
COL4A1-204ENST00000543140 OSGEPQ9NPF4 335 aa17.69■□□□□ 0.42
COL4A1-204ENST00000543140 TOPORSQ9NS56 1045 aaPredicted RBP17.69■□□□□ 0.42
COL4A1-204ENST00000543140 CSADQ9Y600 493 aa17.69■□□□□ 0.42
COL4A1-204ENST00000543140 HNRNPDLO14979 420 aaKnown RBP17.69■□□□□ 0.42
COL4A1-204ENST00000543140 DGAT1O75907 488 aa17.69■□□□□ 0.42
COL4A1-204ENST00000543140 IFI16Q16666 785 aaKnown RBP17.69■□□□□ 0.42
COL4A1-204ENST00000543140 SULF1Q8IWU6 871 aa17.69■□□□□ 0.42
COL4A1-204ENST00000543140 DCPSQ96C86 337 aaKnown RBP17.69■□□□□ 0.42
COL4A1-204ENST00000543140 FAM84AQ96KN4 292 aa17.69■□□□□ 0.42
COL4A1-204ENST00000543140 NTPCRQ9BSD7 190 aaKnown RBP17.69■□□□□ 0.42
COL4A1-204ENST00000543140 POLR3FQ9H1D9 316 aaPredicted RBP17.69■□□□□ 0.42
COL4A1-204ENST00000543140 DKC1O60832 514 aaKnown RBP eCLIP17.68■□□□□ 0.42
COL4A1-204ENST00000543140 STAM2O75886 525 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 KIF4AO95239 1232 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 SUPT20HL2P0C7V6 817 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 CCDC172P0C7W6 258 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 SNRPFP62306 86 aaKnown RBP17.68■□□□□ 0.42
COL4A1-204ENST00000543140 MAP9Q49MG5 647 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 LBX2Q6XYB7 198 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 DAAM2Q86T65 1068 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 CHST13Q8NET6 341 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 SEMA4DQ92854 862 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 BICD1Q96G01 975 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 OTUD5Q96G74 571 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 PAGR1Q9BTK6 254 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 ELP3Q9H9T3 547 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 ATP6V0A4Q9HBG4 840 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 PDLIM7Q9NR12 457 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 MYPNQ86TC9 1320 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 EIF3JO75822 258 aaKnown RBP17.68■□□□□ 0.42
COL4A1-204ENST00000543140 KIF22Q14807 665 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 C8orf74Q6P047 294 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 MOB2Q70IA6 237 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 ZNF771Q7L3S4 317 aaPredicted RBP17.68■□□□□ 0.42
COL4A1-204ENST00000543140 PEX26Q7Z412 305 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 NCAPG2Q86XI2 1143 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 PPM1KQ8N3J5 372 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 MCPH1Q8NEM0 835 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 SPIRE2Q8WWL2 714 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 TMEM143Q96AN5 459 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 CLMNQ96JQ2 1002 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 R3HDMLQ9H3Y0 253 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 ACP6Q9NPH0 428 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 IGSF9BQ9UPX0 1349 aa17.68■□□□□ 0.42
COL4A1-204ENST00000543140 IRF6O14896 467 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 MAPK13O15264 365 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 P4HA2O15460 535 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 DLATP10515 647 aaKnown RBP17.67■□□□□ 0.42
COL4A1-204ENST00000543140 ATP4AP20648 1035 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 EEPD1Q7L9B9 569 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 SLC35G2Q8TBE7 412 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 PARD3BQ8TEW8 1205 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 CCDC102AQ96A19 550 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 RNF14Q9UBS8 474 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 INTUQ9ULD6 942 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 RFX1P22670 979 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 ALDH5A1P51649 535 aaPredicted RBP17.67■□□□□ 0.42
COL4A1-204ENST00000543140 POLGP54098 1239 aaPredicted RBP17.67■□□□□ 0.42
COL4A1-204ENST00000543140 XKR3Q5GH77 459 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 IFT74Q96LB3 600 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 AGPAT1Q99943 283 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 SELENOOQ9BVL4 669 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 THAP2Q9H0W7 228 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 C17orf75Q9HAS0 396 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 ZNF302Q9NR11 478 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 RNF181Q9P0P0 153 aa17.67■□□□□ 0.42
COL4A1-204ENST00000543140 CEP104O60308 925 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms