RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 SMTNP53814 917 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 SMAD3P84022 425 aaKnown RBP15.95■□□□□ 0.14
CPSF1-206ENST00000531480 FAM160A1Q05DH4 1040 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 FAM109BQ6ICB4 259 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-206ENST00000531480 KRBA2Q6ZNG9 492 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 DYMQ7RTS9 669 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 CEP57L1Q8IYX8 460 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 SLC17A8Q8NDX2 589 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 CCDC51Q96ER9 411 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 PAGE5Q96GU1 130 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 KIFC3Q9BVG8 833 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 ELAC1Q9H777 363 aaKnown RBP15.95■□□□□ 0.14
CPSF1-206ENST00000531480 KMT5AQ9NQR1 393 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 DACT1Q9NYF0 836 aa15.95■□□□□ 0.14
CPSF1-206ENST00000531480 FNDC1Q4ZHG4 1894 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-206ENST00000531480 PVALEFA0A1B0GWK0 134 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 GOLGA6L4A6NEF3 574 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 CCDC169A6NNP5 214 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 ZBBXA8MT70 800 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 TRAK2O60296 914 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 GADD45BO75293 160 aaPredicted RBP15.94■□□□□ 0.14
CPSF1-206ENST00000531480 TBCAO75347 108 aaKnown RBP15.94■□□□□ 0.14
CPSF1-206ENST00000531480 PPP1R37O75864 691 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 ERLIN2O94905 339 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 GJB5O95377 273 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 AMHP03971 560 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 KRT18P05783 430 aaKnown RBP15.94■□□□□ 0.14
CPSF1-206ENST00000531480 ARF4P18085 180 aaPredicted RBP15.94■□□□□ 0.14
CPSF1-206ENST00000531480 ABCD1P33897 745 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 SARSP49591 514 aaKnown RBP15.94■□□□□ 0.14
CPSF1-206ENST00000531480 HTRA4P83105 476 aaPredicted RBP15.94■□□□□ 0.14
CPSF1-206ENST00000531480 GTF2BQ00403 316 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 MAPK6Q16659 721 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 UBXN11Q5T124 520 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 ZNF598Q86UK7 904 aaKnown RBP15.94■□□□□ 0.14
CPSF1-206ENST00000531480 HERC6Q8IVU3 1022 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 ELOA2Q8IYF1 753 aaPredicted RBP15.94■□□□□ 0.14
CPSF1-206ENST00000531480 MYCT1Q8N699 235 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 STAMQ92783 540 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 TIGD1Q96MW7 591 aa15.94■□□□□ 0.14
CPSF1-206ENST00000531480 DENND3A2RUS2 1198 aa15.93■□□□□ 0.14
CPSF1-206ENST00000531480 TTLL13PA6NNM8 815 aa15.93■□□□□ 0.14
CPSF1-206ENST00000531480 K7ERI5 159 aa15.93■□□□□ 0.14
CPSF1-206ENST00000531480 SLC16A4O15374 487 aa15.93■□□□□ 0.14
CPSF1-206ENST00000531480 B4GALT5O43286 388 aa15.93■□□□□ 0.14
CPSF1-206ENST00000531480 KLRC4O43908 158 aa15.93■□□□□ 0.14
CPSF1-206ENST00000531480 PRKCBP05771 671 aa15.93■□□□□ 0.14
CPSF1-206ENST00000531480 ZSCAN20P17040 1043 aaPredicted RBP15.93■□□□□ 0.14
CPSF1-206ENST00000531480 ATF7P17544 494 aaPredicted RBP15.93■□□□□ 0.14
CPSF1-206ENST00000531480 UBE2HP62256 183 aa15.93■□□□□ 0.14
CPSF1-206ENST00000531480 NOTUMQ6P988 496 aa15.93■□□□□ 0.14
CPSF1-206ENST00000531480 UNC13DQ70J99 1090 aa15.93■□□□□ 0.14
CPSF1-206ENST00000531480 ZNF720Q7Z2F6 126 aa15.93■□□□□ 0.14
CPSF1-206ENST00000531480 HAUS6Q7Z4H7 955 aa15.93■□□□□ 0.14
CPSF1-206ENST00000531480 SFR1Q86XK3 245 aa15.93■□□□□ 0.14
CPSF1-206ENST00000531480 NPAS4Q8IUM7 802 aa15.93■□□□□ 0.14
CPSF1-206ENST00000531480 ZNF689Q96CS4 500 aaPredicted RBP15.93■□□□□ 0.14
CPSF1-206ENST00000531480 PTPRHQ9HD43 1115 aa15.93■□□□□ 0.14
CPSF1-206ENST00000531480 RNF216Q9NWF9 866 aaPredicted RBP15.93■□□□□ 0.14
CPSF1-206ENST00000531480 TMEM161AQ9NX61 479 aa15.93■□□□□ 0.14
CPSF1-206ENST00000531480 PIN4Q9Y237 131 aaKnown RBP15.93■□□□□ 0.14
CPSF1-206ENST00000531480 GTPBP6O43824 516 aaPredicted RBP15.92■□□□□ 0.14
CPSF1-206ENST00000531480 EOMESO95936 686 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 PIGRP01833 764 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 PROZP22891 400 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 RAB27AP51159 221 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 COASYQ13057 564 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 CUL4BQ13620 913 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 NT5DC1Q5TFE4 455 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 KANK3Q6NY19 840 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 MRPL10Q7Z7H8 261 aaKnown RBP15.92■□□□□ 0.14
CPSF1-206ENST00000531480 ECHDC2Q86YB7 292 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 FAM178BQ8IXR5 827 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 CCDC65Q8IXS2 484 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 MYOCDQ8IZQ8 938 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 DEFB123Q8N688 67 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 SP7Q8TDD2 431 aaPredicted RBP15.92■□□□□ 0.14
CPSF1-206ENST00000531480 HVCN1Q96D96 273 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 FAM105AQ9NUU6 356 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 PANK4Q9NVE7 773 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 PCDHA11Q9Y5I1 949 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 CHD7Q9P2D1 2997 aa15.92■□□□□ 0.14
CPSF1-206ENST00000531480 ABLIM1O14639 778 aa15.91■□□□□ 0.14
CPSF1-206ENST00000531480 NR1I2O75469 434 aa15.91■□□□□ 0.14
CPSF1-206ENST00000531480 DGKIO75912 1065 aa15.91■□□□□ 0.14
CPSF1-206ENST00000531480 SKIP12755 728 aa15.91■□□□□ 0.14
CPSF1-206ENST00000531480 LIG1P18858 919 aa15.91■□□□□ 0.14
CPSF1-206ENST00000531480 CASP1P29466 404 aa15.91■□□□□ 0.14
CPSF1-206ENST00000531480 AFMP43652 599 aa15.91■□□□□ 0.14
CPSF1-206ENST00000531480 NCBP1Q09161 790 aaKnown RBP15.91■□□□□ 0.14
CPSF1-206ENST00000531480 DPYDQ12882 1025 aa15.91■□□□□ 0.14
CPSF1-206ENST00000531480 PRPF4BQ13523 1007 aaKnown RBP15.91■□□□□ 0.14
CPSF1-206ENST00000531480 SLC27A1Q6PCB7 646 aa15.91■□□□□ 0.14
CPSF1-206ENST00000531480 ZPBP2Q6X784 338 aa15.91■□□□□ 0.14
CPSF1-206ENST00000531480 MAP4K3Q8IVH8 894 aa15.91■□□□□ 0.14
CPSF1-206ENST00000531480 GRAMD1CQ8IYS0 662 aa15.91■□□□□ 0.14
CPSF1-206ENST00000531480 CNNM3Q8NE01 707 aa15.91■□□□□ 0.14
CPSF1-206ENST00000531480 ACO2Q99798 780 aaKnown RBP15.91■□□□□ 0.14
CPSF1-206ENST00000531480 PDZD7Q9H5P4 517 aa15.91■□□□□ 0.14
CPSF1-206ENST00000531480 TBX20Q9UMR3 447 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms