RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 CFAP61Q8NHU2 1237 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 PYROXD1Q8WU10 500 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 CPA5Q8WXQ8 436 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 AGPAT1Q99943 283 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 RUSC1Q9BVN2 902 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 INTS13Q9NVM9 706 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 HEY1Q9Y5J3 304 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 MYO5BQ9ULV0 1848 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 DDTLA6NHG4 134 aaPredicted RBP12.52□□□□□ -0.41
SYNPO-204ENST00000519664 LRRIQ3A6PVS8 624 aaPredicted RBP12.52□□□□□ -0.41
SYNPO-204ENST00000519664 PIK3R2O00459 728 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 TLR3O15455 904 aaKnown RBP12.52□□□□□ -0.41
SYNPO-204ENST00000519664 C6orf118Q5T5N4 469 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 GLIS3Q8NEA6 775 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 FBXL13Q8NEE6 735 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 ATP6V1G3Q96LB4 118 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 SEL1LQ9UBV2 794 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 RASA4BC9J798 803 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 MCF2LO15068 1137 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 MSH4O15457 936 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 RASA4O43374 803 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 RASSF2P50749 326 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 EIF3BP55884 814 aaKnown RBP12.52□□□□□ -0.41
SYNPO-204ENST00000519664 HERVK_113P62684 666 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 KRT76Q01546 638 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 ARHGEF18Q6ZSZ5 1173 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 RPAP3Q9H6T3 665 aaPredicted RBP12.52□□□□□ -0.41
SYNPO-204ENST00000519664 ATP6V0A4Q9HBG4 840 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 PSD3Q9NYI0 1048 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 HSPBP1Q9NZL4 362 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 APEX2Q9UBZ4 518 aa12.52□□□□□ -0.41
SYNPO-204ENST00000519664 HERC5Q9UII4 1024 aaKnown RBP12.52□□□□□ -0.41
SYNPO-204ENST00000519664 G3BP2Q9UN86 482 aaKnown RBP12.52□□□□□ -0.41
SYNPO-204ENST00000519664 GYS1P13807 737 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 SCP2P22307 547 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 KIAA0895Q8NCT3 520 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 ELMO3Q96BJ8 720 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 GPRC5CQ9NQ84 441 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 NUB1Q9Y5A7 615 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 PCDHA10Q9Y5I2 948 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 ZSCAN5CA6NGD5 496 aaPredicted RBP12.51□□□□□ -0.41
SYNPO-204ENST00000519664 JAK3P52333 1124 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 TFDP1Q14186 410 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 NXNQ6DKJ4 435 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 RHPN2Q8IUC4 686 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 ZIM3Q96PE6 472 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 POLR3FQ9H1D9 316 aaPredicted RBP12.51□□□□□ -0.41
SYNPO-204ENST00000519664 PIM2Q9P1W9 311 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 L1RE1Q9UN81 338 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 SLIT1O75093 1534 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 TARSL2A2RTX5 802 aaKnown RBP12.51□□□□□ -0.41
SYNPO-204ENST00000519664 GMNCA6NCL1 334 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 MT-ND3P03897 115 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 MST1RQ04912 1400 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 ACTN3Q08043 901 aaPredicted RBP12.51□□□□□ -0.41
SYNPO-204ENST00000519664 ALCAMQ13740 583 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 STXBP2Q15833 593 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 SLC10A5Q5PT55 438 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 NACA2Q9H009 215 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 SLC24A3Q9HC58 644 aa12.51□□□□□ -0.41
SYNPO-204ENST00000519664 RIMS1Q86UR5 1692 aaKnown RBP12.51□□□□□ -0.41
SYNPO-204ENST00000519664 H3BQF6 201 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 PPP2R2AP63151 447 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 MAPK6Q16659 721 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 ZNF667Q5HYK9 610 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 KLHDC7AQ5VTJ3 777 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 DPY19L2Q6NUT2 758 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 HHIPL2Q6UWX4 724 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 KCNK18Q7Z418 384 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 CDR2LQ86X02 465 aaPredicted RBP12.5□□□□□ -0.41
SYNPO-204ENST00000519664 ELOA2Q8IYF1 753 aaPredicted RBP12.5□□□□□ -0.41
SYNPO-204ENST00000519664 PDIK1LQ8N165 341 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 DNAJC7Q99615 494 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 LBHD1Q9BQE6 289 aaPredicted RBP12.5□□□□□ -0.41
SYNPO-204ENST00000519664 PNMA2Q9UL42 364 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 PLS3P13797 630 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 BRAFP15056 766 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 GNA15P30679 374 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 CENPPQ6IPU0 288 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 C9orf72Q96LT7 481 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 STK33Q9BYT3 514 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 PITPNM3Q9BZ71 974 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 RPF1Q9H9Y2 349 aaKnown RBP12.5□□□□□ -0.41
SYNPO-204ENST00000519664 RBAKQ9NYW8 714 aaPredicted RBP12.5□□□□□ -0.41
SYNPO-204ENST00000519664 INTUQ9ULD6 942 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 ERFP50548 548 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 SLC12A2P55011 1212 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 ADCY2Q08462 1091 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 NAB2Q15742 525 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 TSNAXIP1Q2TAA8 658 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 MUM1Q2TAK8 710 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 EDRF1Q3B7T1 1238 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 CCDC125Q86Z20 511 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 HDAC7Q8WUI4 952 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 CFAP36Q96G28 342 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 CNOT10Q9H9A5 744 aaKnown RBP12.5□□□□□ -0.41
SYNPO-204ENST00000519664 KCNQ5Q9NR82 932 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 NAGPAQ9UK23 515 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 ALG6Q9Y672 507 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 PABPN1LA6NDY0 278 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms