RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.04□□□□□ -0.16
TCOF1-213ENST00000514442 SMC1BQ8NDV3 1235 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 CAVIN3Q969G5 261 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 PITPNM3Q9BZ71 974 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 TBC1D22BQ9NU19 505 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 PNMA3Q9UL41 463 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 PVALEFA0A1B0GWK0 134 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 ARHGAP42A6NI28 874 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 ZNF233A6NK53 670 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 IGF2BP3O00425 579 aaKnown RBP eCLIP14.04□□□□□ -0.16
TCOF1-213ENST00000514442 PSMC4P43686 418 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 PMS2P54278 862 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 DYNLT1P63172 113 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 ZNF394Q53GI3 561 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 TXNRD3Q86VQ6 643 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 RFX6Q8HWS3 928 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 DDX20Q9UHI6 824 aaKnown RBP14.04□□□□□ -0.16
TCOF1-213ENST00000514442 DNAJC12Q9UKB3 198 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 H7C0C1 242 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 NQO1P15559 274 aaKnown RBP14.04□□□□□ -0.16
TCOF1-213ENST00000514442 ATP5OP48047 213 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 KCNB1Q14721 858 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 ALKBH5Q6P6C2 394 aaKnown RBP14.04□□□□□ -0.16
TCOF1-213ENST00000514442 PRMT1Q99873 361 aaKnown RBP14.04□□□□□ -0.16
TCOF1-213ENST00000514442 MAN1A1P33908 653 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 BYSLQ13895 437 aaKnown RBP14.04□□□□□ -0.16
TCOF1-213ENST00000514442 ITIH4Q14624 930 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 CAND2O75155 1236 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 GYS1P13807 737 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 DPEP1P16444 411 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 KCNH2Q12809 1159 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 MAP3K21Q5TCX8 1036 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 OR2W6PQ8NHA6 318 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 RNF217Q8TC41 542 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 AENQ8WTP8 325 aaKnown RBP14.03□□□□□ -0.16
TCOF1-213ENST00000514442 DNAJC9Q8WXX5 260 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 ARL2BPQ9Y2Y0 163 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 ADGRB2O60241 1585 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 CSPG5O95196 566 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 QARSP47897 775 aaKnown RBP14.03□□□□□ -0.16
TCOF1-213ENST00000514442 HHIPL2Q6UWX4 724 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 C3orf67Q6ZVT6 689 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 TMEM39BQ9GZU3 492 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 POLLQ9UGP5 575 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 GGT7Q9UJ14 662 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 USP15Q9Y4E8 981 aaPredicted RBP14.03□□□□□ -0.16
TCOF1-213ENST00000514442 DENND3A2RUS2 1198 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 KRT76Q01546 638 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 GFPT1Q06210 699 aaPredicted RBP14.03□□□□□ -0.16
TCOF1-213ENST00000514442 ALCAMQ13740 583 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 RCN2Q14257 317 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 RSBN1LQ6PCB5 846 aaPredicted RBP14.03□□□□□ -0.16
TCOF1-213ENST00000514442 RSPH3Q86UC2 560 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 RAPGEF5Q92565 580 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 FAM213AQ9BRX8 229 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 SNX25Q9H3E2 840 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 RPF1Q9H9Y2 349 aaKnown RBP14.03□□□□□ -0.16
TCOF1-213ENST00000514442 TMBIM4Q9HC24 238 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 FBXO40Q9UH90 709 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 CNTNAP5Q8WYK1 1306 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 P4HBP07237 508 aaKnown RBP14.03□□□□□ -0.16
TCOF1-213ENST00000514442 ZBTB17Q13105 803 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 EGFL6Q8IUX8 553 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 MS4A14Q96JA4 679 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 GGA2Q9UJY4 613 aa14.03□□□□□ -0.16
TCOF1-213ENST00000514442 KNOP1Q1ED39 458 aaKnown RBP14.02□□□□□ -0.16
TCOF1-213ENST00000514442 DNAJC24Q6P3W2 148 aa14.02□□□□□ -0.16
TCOF1-213ENST00000514442 SPATA21Q7Z572 469 aa14.02□□□□□ -0.16
TCOF1-213ENST00000514442 B4GALNT2Q8NHY0 566 aa14.02□□□□□ -0.16
TCOF1-213ENST00000514442 GSDMBQ8TAX9 411 aa14.02□□□□□ -0.16
TCOF1-213ENST00000514442 KAT2BQ92831 832 aa14.02□□□□□ -0.16
TCOF1-213ENST00000514442 ACAD9Q9H845 621 aa14.02□□□□□ -0.16
TCOF1-213ENST00000514442 ELP3Q9H9T3 547 aa14.02□□□□□ -0.16
TCOF1-213ENST00000514442 DLGAP2Q9P1A6 1054 aa14.02□□□□□ -0.16
TCOF1-213ENST00000514442 XPOTO43592 962 aaKnown RBP14.02□□□□□ -0.16
TCOF1-213ENST00000514442 HNRNPCP07910 306 aaKnown RBP eCLIP14.02□□□□□ -0.16
TCOF1-213ENST00000514442 MYL3P08590 195 aa14.02□□□□□ -0.16
TCOF1-213ENST00000514442 USP11P51784 963 aa14.02□□□□□ -0.16
TCOF1-213ENST00000514442 ADCY1Q08828 1119 aa14.02□□□□□ -0.16
TCOF1-213ENST00000514442 ARHGAP22Q7Z5H3 698 aa14.02□□□□□ -0.16
TCOF1-213ENST00000514442 C2orf69Q8N8R5 385 aa14.02□□□□□ -0.16
TCOF1-213ENST00000514442 ZNF302Q9NR11 478 aa14.02□□□□□ -0.16
TCOF1-213ENST00000514442 SMARCAL1Q9NZC9 954 aa14.02□□□□□ -0.16
TCOF1-213ENST00000514442 DCCP43146 1447 aa14.02□□□□□ -0.17
TCOF1-213ENST00000514442 NEURL4Q96JN8 1562 aa14.02□□□□□ -0.17
TCOF1-213ENST00000514442 hCG_2014768A0A024R1R8 64 aa14.02□□□□□ -0.17
TCOF1-213ENST00000514442 A6NJR5 290 aa14.02□□□□□ -0.17
TCOF1-213ENST00000514442 SGK1O00141 431 aa14.02□□□□□ -0.17
TCOF1-213ENST00000514442 ACBD5Q5T8D3 534 aaPredicted RBP14.02□□□□□ -0.17
TCOF1-213ENST00000514442 CYFIP1Q7L576 1253 aa14.02□□□□□ -0.17
TCOF1-213ENST00000514442 LONP2Q86WA8 852 aa14.02□□□□□ -0.17
TCOF1-213ENST00000514442 XXYLT1Q8NBI6 393 aa14.02□□□□□ -0.17
TCOF1-213ENST00000514442 GPR75-ASB3A0A0A6YYF3 556 aa14.02□□□□□ -0.17
TCOF1-213ENST00000514442 CRCPO75575 148 aa14.02□□□□□ -0.17
TCOF1-213ENST00000514442 KRT1P04264 644 aa14.02□□□□□ -0.17
TCOF1-213ENST00000514442 CHRM1P11229 460 aaPredicted RBP14.02□□□□□ -0.17
TCOF1-213ENST00000514442 PECAM1P16284 738 aaPredicted RBP14.02□□□□□ -0.17
TCOF1-213ENST00000514442 ITKQ08881 620 aa14.02□□□□□ -0.17
TCOF1-213ENST00000514442 MAP7D1Q3KQU3 841 aa14.02□□□□□ -0.17
TCOF1-213ENST00000514442 COL23A1Q86Y22 540 aaPredicted RBP14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms