RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 EPS15L1Q9UBC2 864 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 SLC4A7Q9Y6M7 1214 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 MAGEA13PA6NCF6 341 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 SRRM3A6NNA2 597 aaPredicted RBP12□□□□□ -0.49
TCOF1-211ENST00000513346 GLI1P08151 1106 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 ASNSP08243 561 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 KLRC1P26715 233 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 PGM1P36871 562 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 KLK7P49862 253 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 FAM160B1Q5W0V3 765 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 TMEM179Q6ZVK1 233 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 ANO5Q75V66 913 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 HIPK4Q8NE63 616 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 UBE2TQ9NPD8 197 aaPredicted RBP12□□□□□ -0.49
TCOF1-211ENST00000513346 DNAJC12Q9UKB3 198 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 L3MBTL1Q9Y468 752 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 UTYO14607 1347 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 IQANK1A0A1B0GTG1 560 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 GH2P01242 217 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 USP11P51784 963 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 IGBP1P78318 339 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 HADHQ16836 314 aaKnown RBP12□□□□□ -0.49
TCOF1-211ENST00000513346 RASSF3Q86WH2 238 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 ZNF34Q8IZ26 560 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 PYROXD1Q8WU10 500 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 HDAC7Q8WUI4 952 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 A1CFQ9NQ94 594 aaKnown RBP12□□□□□ -0.49
TCOF1-211ENST00000513346 TRAF3IP3Q9Y228 551 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 SLIT1O75093 1534 aa12□□□□□ -0.49
TCOF1-211ENST00000513346 DLATP10515 647 aaKnown RBP11.99□□□□□ -0.49
TCOF1-211ENST00000513346 OSBPP22059 807 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 GPC5P78333 572 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 PTK2Q05397 1052 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 MED21Q13503 144 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 STAT4Q14765 748 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 TTC17Q96AE7 1141 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 SLC10A4Q96EP9 437 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 SERPINI1Q99574 410 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 ERP44Q9BS26 406 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 DRC3Q9H069 523 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 TDRD3Q9H7E2 651 aaKnown RBP11.99□□□□□ -0.49
TCOF1-211ENST00000513346 C1orf112Q9NSG2 853 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 CDH16O75309 829 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 UBOX5O94941 541 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 YARSP54577 528 aaKnown RBP11.99□□□□□ -0.49
TCOF1-211ENST00000513346 BPIFB4P59827 614 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 NXNQ6DKJ4 435 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 GRAMD4Q6IC98 578 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 FAM160B2Q86V87 743 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 MFN1Q8IWA4 741 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 PIGOQ8TEQ8 1089 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 PHF20Q9BVI0 1012 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 SENP1Q9P0U3 644 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 MCM8Q9UJA3 840 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 TACC3Q9Y6A5 838 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 CNTNAP4Q9C0A0 1308 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 ASAP2O43150 1006 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 PLEKP08567 350 aaPredicted RBP11.99□□□□□ -0.49
TCOF1-211ENST00000513346 ELF3P78545 371 aaPredicted RBP11.99□□□□□ -0.49
TCOF1-211ENST00000513346 SLC29A2Q14542 456 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 TTMPQ5BVD1 217 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 CRLF3Q8IUI8 442 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 SP8Q8IXZ3 490 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 TSEN2Q8NCE0 465 aaKnown RBP11.99□□□□□ -0.49
TCOF1-211ENST00000513346 SLC7A3Q8WY07 619 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 NT5C1BQ96P26 610 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 AGXT2Q9BYV1 514 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 MTFR1LQ9H019 292 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 PABPC3Q9H361 631 aaKnown RBP11.99□□□□□ -0.49
TCOF1-211ENST00000513346 MX2P20592 715 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 MRPS9P82933 396 aaKnown RBP11.99□□□□□ -0.49
TCOF1-211ENST00000513346 AOC3Q16853 763 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 LONRF1Q17RB8 773 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 FIGNQ5HY92 759 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 RGS9BPQ6ZS82 235 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 ICA1LQ8NDH6 482 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 CRAMP1Q96RY5 1269 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 TMEM47Q9BQJ4 181 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 FAM53CQ9NYF3 392 aa11.99□□□□□ -0.49
TCOF1-211ENST00000513346 STK10O94804 968 aaKnown RBP11.98□□□□□ -0.49
TCOF1-211ENST00000513346 ANXA13P27216 316 aa11.98□□□□□ -0.49
TCOF1-211ENST00000513346 KPNB1Q14974 876 aaKnown RBP11.98□□□□□ -0.49
TCOF1-211ENST00000513346 SNF8Q96H20 258 aa11.98□□□□□ -0.49
TCOF1-211ENST00000513346 CDHR1Q96JP9 859 aa11.98□□□□□ -0.49
TCOF1-211ENST00000513346 NACA2Q9H009 215 aa11.98□□□□□ -0.49
TCOF1-211ENST00000513346 G3BP2Q9UN86 482 aaKnown RBP11.98□□□□□ -0.49
TCOF1-211ENST00000513346 TRAPPC3O43617 180 aa11.98□□□□□ -0.49
TCOF1-211ENST00000513346 TNNC2P02585 160 aa11.98□□□□□ -0.49
TCOF1-211ENST00000513346 SARSP49591 514 aaKnown RBP11.98□□□□□ -0.49
TCOF1-211ENST00000513346 STK4Q13043 487 aa11.98□□□□□ -0.49
TCOF1-211ENST00000513346 UBE2SQ16763 222 aa11.98□□□□□ -0.49
TCOF1-211ENST00000513346 NT5DC1Q5TFE4 455 aa11.98□□□□□ -0.49
TCOF1-211ENST00000513346 CRELD2Q6UXH1 353 aaPredicted RBP11.98□□□□□ -0.49
TCOF1-211ENST00000513346 POMGNT1Q8WZA1 660 aa11.98□□□□□ -0.49
TCOF1-211ENST00000513346 RAD54LQ92698 747 aa11.98□□□□□ -0.49
TCOF1-211ENST00000513346 CELF4Q9BZC1 486 aaKnown RBP11.98□□□□□ -0.49
TCOF1-211ENST00000513346 ANLNQ9NQW6 1124 aa11.98□□□□□ -0.49
TCOF1-211ENST00000513346 SEPT9Q9UHD8 586 aaPredicted RBP11.98□□□□□ -0.49
TCOF1-211ENST00000513346 ARHGEF28Q8N1W1 1705 aaKnown RBP11.98□□□□□ -0.49
TCOF1-211ENST00000513346 PNMA6FA0A0J9YX94 578 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms