RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 ACTN3Q08043 901 aaPredicted RBP9.48□□□□□ -0.89
VCAN-208ENST00000512590 NSUN6Q8TEA1 469 aaKnown RBP9.48□□□□□ -0.89
VCAN-208ENST00000512590 GLMNQ92990 594 aa9.48□□□□□ -0.89
VCAN-208ENST00000512590 KIF12Q96FN5 646 aa9.48□□□□□ -0.89
VCAN-208ENST00000512590 FAR2Q96K12 515 aa9.48□□□□□ -0.89
VCAN-208ENST00000512590 FAM161BQ96MY7 647 aa9.48□□□□□ -0.89
VCAN-208ENST00000512590 XPO6Q96QU8 1125 aaKnown RBP9.48□□□□□ -0.89
VCAN-208ENST00000512590 PTPN22Q9Y2R2 807 aa9.48□□□□□ -0.89
VCAN-208ENST00000512590 INPP4BO15327 924 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 HSPA4LO95757 839 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 GNRH1P01148 92 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 KYAT1Q16773 422 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 CENPPQ6IPU0 288 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 KCNV1Q6PIU1 500 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 MTSS1LQ765P7 747 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 ZSCAN1Q8NBB4 408 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 IQCDQ96DY2 449 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 PKNOX2Q96KN3 472 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 BHMT2Q9H2M3 363 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 CHST12Q9NRB3 414 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 AASDHPPTQ9NRN7 309 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 PLB1Q6P1J6 1458 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 FGD6Q6ZV73 1430 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 KCNK3O14649 394 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 PQBP1O60828 265 aaKnown RBP9.47□□□□□ -0.89
VCAN-208ENST00000512590 PEX14O75381 377 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 TXNP10599 105 aaKnown RBP9.47□□□□□ -0.89
VCAN-208ENST00000512590 PBLDP30039 288 aaPredicted RBP9.47□□□□□ -0.89
VCAN-208ENST00000512590 WEE1P30291 646 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 EPHB3P54753 998 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 CAMK2GQ13555 558 aaPredicted RBP9.47□□□□□ -0.89
VCAN-208ENST00000512590 TRIM71Q2Q1W2 868 aaKnown RBP9.47□□□□□ -0.89
VCAN-208ENST00000512590 FSCBQ5H9T9 825 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 RAPGEF5Q92565 580 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 RSPH9Q9H1X1 276 aaPredicted RBP9.47□□□□□ -0.89
VCAN-208ENST00000512590 PARVBQ9HBI1 364 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 DACT1Q9NYF0 836 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.47□□□□□ -0.89
VCAN-208ENST00000512590 PKP3Q9Y446 797 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 RUSC2Q8N2Y8 1516 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 LRRD1A4D1F6 860 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 GRK2P25098 689 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 GUCY1A2P33402 732 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 ZAP70P43403 619 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 ZBTB17Q13105 803 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 KRT40Q6A162 431 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 PRR23BQ6ZRT6 265 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 GPKOWQ92917 476 aaPredicted RBP eCLIP9.47□□□□□ -0.89
VCAN-208ENST00000512590 FAF2Q96CS3 445 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 PNKPQ96T60 521 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 FANCEQ9HB96 536 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 LATS2Q9NRM7 1088 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 KCNJ14Q9UNX9 436 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 CAB39Q9Y376 341 aaPredicted RBP9.47□□□□□ -0.89
VCAN-208ENST00000512590 TPD52L2O43399 206 aaKnown RBP9.47□□□□□ -0.89
VCAN-208ENST00000512590 CUTAO60888 179 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 TUBB4AP04350 444 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 GTF2A2P52657 109 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 MTFR1Q15390 333 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 GALNT17Q6IS24 598 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 B4GALNT4Q76KP1 1039 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 CERKQ8TCT0 537 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 BHMTQ93088 406 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 RMDN3Q96TC7 470 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 KIAA1468Q9P260 1216 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 CPSF2Q9P2I0 782 aaKnown RBP9.47□□□□□ -0.89
VCAN-208ENST00000512590 NOS1P29475 1434 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 CYP7B1O75881 506 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 AMD1P17707 334 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 SP100P23497 879 aaPredicted RBP9.47□□□□□ -0.89
VCAN-208ENST00000512590 ANXA11P50995 505 aaKnown RBP9.47□□□□□ -0.89
VCAN-208ENST00000512590 PLD1Q13393 1074 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 DMC1Q14565 340 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 KIAA1324Q6UXG2 1013 aaKnown RBP9.47□□□□□ -0.89
VCAN-208ENST00000512590 ZNF668Q96K58 619 aaPredicted RBP9.47□□□□□ -0.89
VCAN-208ENST00000512590 CIPCQ9C0C6 399 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 COA1Q9GZY4 146 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 ACAD9Q9H845 621 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 CCDC177Q9NQR7 707 aaPredicted RBP9.47□□□□□ -0.89
VCAN-208ENST00000512590 ELOVL2Q9NXB9 296 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 PCDHB11Q9Y5F2 797 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 N6AMT1Q9Y5N5 214 aa9.47□□□□□ -0.89
VCAN-208ENST00000512590 HIP1RO75146 1068 aa9.46□□□□□ -0.89
VCAN-208ENST00000512590 PACS1Q6VY07 963 aa9.46□□□□□ -0.89
VCAN-208ENST00000512590 FOXP4Q8IVH2 680 aaPredicted RBP9.46□□□□□ -0.89
VCAN-208ENST00000512590 MICALL2Q8IY33 904 aa9.46□□□□□ -0.89
VCAN-208ENST00000512590 SLITRK1Q96PX8 696 aa9.46□□□□□ -0.89
VCAN-208ENST00000512590 TRIM8Q9BZR9 551 aa9.46□□□□□ -0.89
VCAN-208ENST00000512590 RNF208Q9H0X6 261 aa9.46□□□□□ -0.89
VCAN-208ENST00000512590 PLEKHA4Q9H4M7 779 aa9.46□□□□□ -0.89
VCAN-208ENST00000512590 ARHGEF9O43307 516 aa9.46□□□□□ -0.89
VCAN-208ENST00000512590 TUBBP07437 444 aa9.46□□□□□ -0.89
VCAN-208ENST00000512590 MCF2P10911 925 aa9.46□□□□□ -0.89
VCAN-208ENST00000512590 DNAJB2P25686 324 aa9.46□□□□□ -0.89
VCAN-208ENST00000512590 THPOP40225 353 aa9.46□□□□□ -0.89
VCAN-208ENST00000512590 CLK3P49761 638 aaKnown RBP9.46□□□□□ -0.89
VCAN-208ENST00000512590 ALDH6A1Q02252 535 aaKnown RBP9.46□□□□□ -0.89
VCAN-208ENST00000512590 SPP2Q13103 211 aa9.46□□□□□ -0.89
VCAN-208ENST00000512590 NBPF9Q3BBW0 867 aa9.46□□□□□ -0.89
VCAN-208ENST00000512590 RFWD2Q8NHY2 731 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms