RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 PSRC1Q6PGN9 363 aaPredicted RBP32.58■■■□□ 2.81
LIMCH1-211ENST00000509638 ZNF720Q7Z2F6 126 aa32.58■■■□□ 2.81
LIMCH1-211ENST00000509638 GLIS3Q8NEA6 775 aa32.58■■■□□ 2.81
LIMCH1-211ENST00000509638 SMARCE1Q969G3 411 aa32.58■■■□□ 2.81
LIMCH1-211ENST00000509638 CCDC47Q96A33 483 aaKnown RBP32.58■■■□□ 2.81
LIMCH1-211ENST00000509638 PRIMPOLQ96LW4 560 aa32.58■■■□□ 2.81
LIMCH1-211ENST00000509638 ST6GALNAC4Q9H4F1 302 aa32.58■■■□□ 2.81
LIMCH1-211ENST00000509638 PCDHA5Q9Y5H7 936 aa32.58■■■□□ 2.81
LIMCH1-211ENST00000509638 CNTNAP2Q9UHC6 1331 aa32.58■■■□□ 2.81
LIMCH1-211ENST00000509638 MYBP10242 640 aa32.58■■■□□ 2.81
LIMCH1-211ENST00000509638 SCP2P22307 547 aa32.58■■■□□ 2.81
LIMCH1-211ENST00000509638 PPP1R37O75864 691 aa32.57■■■□□ 2.8
LIMCH1-211ENST00000509638 STRN3Q13033 797 aa32.57■■■□□ 2.8
LIMCH1-211ENST00000509638 KCNB1Q14721 858 aa32.57■■■□□ 2.8
LIMCH1-211ENST00000509638 SPATA20Q8TB22 786 aa32.57■■■□□ 2.8
LIMCH1-211ENST00000509638 KCNN1Q92952 543 aa32.57■■■□□ 2.8
LIMCH1-211ENST00000509638 USP20Q9Y2K6 914 aa32.57■■■□□ 2.8
LIMCH1-211ENST00000509638 ACKR2O00590 384 aa32.56■■■□□ 2.8
LIMCH1-211ENST00000509638 RHOBTB3O94955 611 aa32.56■■■□□ 2.8
LIMCH1-211ENST00000509638 GTF2BQ00403 316 aa32.56■■■□□ 2.8
LIMCH1-211ENST00000509638 PRPF4BQ13523 1007 aaKnown RBP32.56■■■□□ 2.8
LIMCH1-211ENST00000509638 ZNF365Q70YC5 407 aa32.56■■■□□ 2.8
LIMCH1-211ENST00000509638 CPB2Q96IY4 423 aa32.56■■■□□ 2.8
LIMCH1-211ENST00000509638 GSDMAQ96QA5 445 aa32.56■■■□□ 2.8
LIMCH1-211ENST00000509638 BUD13Q9BRD0 619 aaKnown RBP eCLIP32.56■■■□□ 2.8
LIMCH1-211ENST00000509638 FTHL17Q9BXU8 183 aa32.56■■■□□ 2.8
LIMCH1-211ENST00000509638 SLC39A2Q9NP94 309 aa32.56■■■□□ 2.8
LIMCH1-211ENST00000509638 TBX20Q9UMR3 447 aa32.56■■■□□ 2.8
LIMCH1-211ENST00000509638 TTLL13PA6NNM8 815 aa32.55■■■□□ 2.8
LIMCH1-211ENST00000509638 ARF4P18085 180 aaPredicted RBP32.55■■■□□ 2.8
LIMCH1-211ENST00000509638 ABCD1P33897 745 aa32.55■■■□□ 2.8
LIMCH1-211ENST00000509638 OTOP2Q7RTS6 562 aa32.55■■■□□ 2.8
LIMCH1-211ENST00000509638 GDF15Q99988 308 aa32.55■■■□□ 2.8
LIMCH1-211ENST00000509638 RMND1Q9NWS8 449 aa32.55■■■□□ 2.8
LIMCH1-211ENST00000509638 MGEA5O60502 916 aa32.54■■■□□ 2.8
LIMCH1-211ENST00000509638 ACTN1P12814 892 aa32.54■■■□□ 2.8
LIMCH1-211ENST00000509638 HOXA11P31270 313 aaPredicted RBP32.54■■■□□ 2.8
LIMCH1-211ENST00000509638 ALCAMQ13740 583 aa32.54■■■□□ 2.8
LIMCH1-211ENST00000509638 TMEM132AQ24JP5 1023 aa32.54■■■□□ 2.8
LIMCH1-211ENST00000509638 TMEM240Q5SV17 173 aa32.54■■■□□ 2.8
LIMCH1-211ENST00000509638 KIAA0895Q8NCT3 520 aa32.54■■■□□ 2.8
LIMCH1-211ENST00000509638 LINC01599Q8WXQ3 324 aa32.54■■■□□ 2.8
LIMCH1-211ENST00000509638 HVCN1Q96D96 273 aa32.54■■■□□ 2.8
LIMCH1-211ENST00000509638 STRA6Q9BX79 667 aa32.54■■■□□ 2.8
LIMCH1-211ENST00000509638 MRPL4Q9BYD3 311 aaKnown RBP32.54■■■□□ 2.8
LIMCH1-211ENST00000509638 NCBP1Q09161 790 aaKnown RBP32.53■■■□□ 2.8
LIMCH1-211ENST00000509638 STK4Q13043 487 aa32.53■■■□□ 2.8
LIMCH1-211ENST00000509638 IKBKEQ14164 716 aa32.53■■■□□ 2.8
LIMCH1-211ENST00000509638 STXBP4Q6ZWJ1 553 aa32.53■■■□□ 2.8
LIMCH1-211ENST00000509638 MAP4K3Q8IVH8 894 aa32.53■■■□□ 2.8
LIMCH1-211ENST00000509638 PTPRSQ13332 1948 aa32.53■■■□□ 2.8
LIMCH1-211ENST00000509638 FGBP02675 491 aa32.53■■■□□ 2.8
LIMCH1-211ENST00000509638 PSMD2Q13200 908 aa32.53■■■□□ 2.8
LIMCH1-211ENST00000509638 NOTUMQ6P988 496 aa32.53■■■□□ 2.8
LIMCH1-211ENST00000509638 BICD1Q96G01 975 aa32.53■■■□□ 2.8
LIMCH1-211ENST00000509638 PCDHB13Q9Y5F0 798 aa32.53■■■□□ 2.8
LIMCH1-211ENST00000509638 ZSCAN20P17040 1043 aaPredicted RBP32.52■■■□□ 2.8
LIMCH1-211ENST00000509638 AXLP30530 894 aa32.52■■■□□ 2.8
LIMCH1-211ENST00000509638 SARSP49591 514 aaKnown RBP32.52■■■□□ 2.8
LIMCH1-211ENST00000509638 KCNA1Q09470 495 aa32.52■■■□□ 2.8
LIMCH1-211ENST00000509638 DSC3Q14574 896 aa32.52■■■□□ 2.8
LIMCH1-211ENST00000509638 L1TD1Q5T7N2 865 aaKnown RBP32.52■■■□□ 2.8
LIMCH1-211ENST00000509638 NT5DC1Q5TFE4 455 aa32.52■■■□□ 2.8
LIMCH1-211ENST00000509638 EPM2AIP1Q7L775 607 aaPredicted RBP32.52■■■□□ 2.8
LIMCH1-211ENST00000509638 ADAM2Q99965 735 aa32.52■■■□□ 2.8
LIMCH1-211ENST00000509638 TARS2Q9BW92 718 aaKnown RBP32.52■■■□□ 2.8
LIMCH1-211ENST00000509638 UBE2OQ9C0C9 1292 aaKnown RBP32.52■■■□□ 2.8
LIMCH1-211ENST00000509638 CHST12Q9NRB3 414 aa32.52■■■□□ 2.8
LIMCH1-211ENST00000509638 EIF3DO15371 548 aaKnown RBP eCLIP32.51■■■□□ 2.79
LIMCH1-211ENST00000509638 BAIAP3O94812 1187 aa32.51■■■□□ 2.79
LIMCH1-211ENST00000509638 PRPF6O94906 941 aaKnown RBP32.51■■■□□ 2.79
LIMCH1-211ENST00000509638 NFKBIBQ15653 356 aa32.51■■■□□ 2.79
LIMCH1-211ENST00000509638 TWF2Q6IBS0 349 aaKnown RBP32.51■■■□□ 2.79
LIMCH1-211ENST00000509638 CDR2LQ86X02 465 aaPredicted RBP32.51■■■□□ 2.79
LIMCH1-211ENST00000509638 TSPYL2Q9H2G4 693 aaPredicted RBP32.51■■■□□ 2.79
LIMCH1-211ENST00000509638 KIAA1468Q9P260 1216 aa32.51■■■□□ 2.79
LIMCH1-211ENST00000509638 MAN1B1Q9UKM7 699 aa32.51■■■□□ 2.79
LIMCH1-211ENST00000509638 GDAQ9Y2T3 454 aa32.51■■■□□ 2.79
LIMCH1-211ENST00000509638 LAMA3Q16787 3333 aa32.51■■■□□ 2.79
LIMCH1-211ENST00000509638 ABHD14A-ACY1A0A1B0GW23 586 aa32.5■■■□□ 2.79
LIMCH1-211ENST00000509638 HNRNPDLO14979 420 aaKnown RBP32.5■■■□□ 2.79
LIMCH1-211ENST00000509638 ATF7IP2Q5U623 682 aa32.5■■■□□ 2.79
LIMCH1-211ENST00000509638 PDZD7Q9H5P4 517 aa32.5■■■□□ 2.79
LIMCH1-211ENST00000509638 UBE4BO95155 1302 aa32.5■■■□□ 2.79
LIMCH1-211ENST00000509638 KLHL40Q2TBA0 621 aa32.49■■■□□ 2.79
LIMCH1-211ENST00000509638 CCDC183Q5T5S1 534 aa32.49■■■□□ 2.79
LIMCH1-211ENST00000509638 SCFD1Q8WVM8 642 aa32.49■■■□□ 2.79
LIMCH1-211ENST00000509638 CCDC51Q96ER9 411 aa32.49■■■□□ 2.79
LIMCH1-211ENST00000509638 ACCSQ96QU6 501 aa32.49■■■□□ 2.79
LIMCH1-211ENST00000509638 ACO2Q99798 780 aaKnown RBP32.49■■■□□ 2.79
LIMCH1-211ENST00000509638 TTC3P53804 2025 aa32.49■■■□□ 2.79
LIMCH1-211ENST00000509638 ZMYM2Q9UBW7 1377 aa32.49■■■□□ 2.79
LIMCH1-211ENST00000509638 ZBBXA8MT70 800 aa32.49■■■□□ 2.79
LIMCH1-211ENST00000509638 BIN1O00499 593 aa32.49■■■□□ 2.79
LIMCH1-211ENST00000509638 EFCAB14O75071 495 aa32.49■■■□□ 2.79
LIMCH1-211ENST00000509638 C9orf50Q5SZB4 431 aa32.49■■■□□ 2.79
LIMCH1-211ENST00000509638 RTN4RL1Q86UN2 441 aaPredicted RBP32.49■■■□□ 2.79
LIMCH1-211ENST00000509638 SMYD4Q8IYR2 804 aaPredicted RBP32.49■■■□□ 2.79
LIMCH1-211ENST00000509638 IKZF4Q9H2S9 585 aa32.49■■■□□ 2.79
LIMCH1-211ENST00000509638 RGS18Q9NS28 235 aa32.49■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms