RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 CNKSR3Q6P9H4 555 aa13.09□□□□□ -0.31
CUX1-210ENST00000497815 ZNF365Q70YC5 407 aa13.09□□□□□ -0.31
CUX1-210ENST00000497815 OTOP2Q7RTS6 562 aa13.09□□□□□ -0.31
CUX1-210ENST00000497815 TAS1R3Q7RTX0 852 aa13.09□□□□□ -0.31
CUX1-210ENST00000497815 ZNF720Q7Z2F6 126 aa13.09□□□□□ -0.31
CUX1-210ENST00000497815 CDR2LQ86X02 465 aaPredicted RBP13.09□□□□□ -0.31
CUX1-210ENST00000497815 ELOA2Q8IYF1 753 aaPredicted RBP13.09□□□□□ -0.31
CUX1-210ENST00000497815 CPB2Q96IY4 423 aa13.09□□□□□ -0.31
CUX1-210ENST00000497815 TMX1Q9H3N1 280 aa13.09□□□□□ -0.31
CUX1-210ENST00000497815 FZD8Q9H461 694 aa13.09□□□□□ -0.31
CUX1-210ENST00000497815 OLFML3Q9NRN5 406 aa13.09□□□□□ -0.31
CUX1-210ENST00000497815 PRMT7Q9NVM4 692 aaPredicted RBP13.09□□□□□ -0.31
CUX1-210ENST00000497815 TBX20Q9UMR3 447 aa13.09□□□□□ -0.31
CUX1-210ENST00000497815 BIN1O00499 593 aa13.08□□□□□ -0.32
CUX1-210ENST00000497815 MGEA5O60502 916 aa13.08□□□□□ -0.32
CUX1-210ENST00000497815 PRPF6O94906 941 aaKnown RBP13.08□□□□□ -0.32
CUX1-210ENST00000497815 FGBP02675 491 aa13.08□□□□□ -0.32
CUX1-210ENST00000497815 PFKMP08237 780 aa13.08□□□□□ -0.32
CUX1-210ENST00000497815 EHHADHQ08426 723 aa13.08□□□□□ -0.32
CUX1-210ENST00000497815 NCBP1Q09161 790 aaKnown RBP13.08□□□□□ -0.32
CUX1-210ENST00000497815 STK4Q13043 487 aa13.08□□□□□ -0.32
CUX1-210ENST00000497815 IKBKEQ14164 716 aa13.08□□□□□ -0.32
CUX1-210ENST00000497815 NFKBIBQ15653 356 aa13.08□□□□□ -0.32
CUX1-210ENST00000497815 SLC17A8Q8NDX2 589 aa13.08□□□□□ -0.32
CUX1-210ENST00000497815 APBB2Q92870 758 aa13.08□□□□□ -0.32
CUX1-210ENST00000497815 BICD1Q96G01 975 aa13.08□□□□□ -0.32
CUX1-210ENST00000497815 ADAM2Q99965 735 aa13.08□□□□□ -0.32
CUX1-210ENST00000497815 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.08□□□□□ -0.324e-7■□□□□ 10.9
CUX1-210ENST00000497815 TMEM134Q9H6X4 195 aa13.08□□□□□ -0.32
CUX1-210ENST00000497815 AGPAT5Q9NUQ2 364 aa13.08□□□□□ -0.32
CUX1-210ENST00000497815 RMND1Q9NWS8 449 aa13.08□□□□□ -0.32
CUX1-210ENST00000497815 MAN1B1Q9UKM7 699 aa13.08□□□□□ -0.32
CUX1-210ENST00000497815 ZBBXA8MT70 800 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 ACKR2O00590 384 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 RHOBTB3O94955 611 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 ACTN1P12814 892 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 ZSCAN20P17040 1043 aaPredicted RBP13.07□□□□□ -0.32
CUX1-210ENST00000497815 ARF4P18085 180 aaPredicted RBP13.07□□□□□ -0.32
CUX1-210ENST00000497815 HOXA11P31270 313 aaPredicted RBP13.07□□□□□ -0.32
CUX1-210ENST00000497815 GTF2BQ00403 316 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 KCNA1Q09470 495 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 PSMD2Q13200 908 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 KCNB1Q14721 858 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 FAM187BQ17R55 369 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 TMEM240Q5SV17 173 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 NT5DC1Q5TFE4 455 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 TWF2Q6IBS0 349 aaKnown RBP13.07□□□□□ -0.32
CUX1-210ENST00000497815 CAVIN1Q6NZI2 390 aaKnown RBP13.07□□□□□ -0.32
CUX1-210ENST00000497815 PSRC1Q6PGN9 363 aaPredicted RBP13.07□□□□□ -0.32
CUX1-210ENST00000497815 STXBP4Q6ZWJ1 553 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 NELFCDQ8IXH7 590 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 SMYD4Q8IYR2 804 aaPredicted RBP13.07□□□□□ -0.32
CUX1-210ENST00000497815 KIAA0895Q8NCT3 520 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 PRIMPOLQ96LW4 560 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 GSDMAQ96QA5 445 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 TARS2Q9BW92 718 aaKnown RBP13.07□□□□□ -0.32
CUX1-210ENST00000497815 MRPL4Q9BYD3 311 aaKnown RBP13.07□□□□□ -0.32
CUX1-210ENST00000497815 UBE2OQ9C0C9 1292 aaKnown RBP13.07□□□□□ -0.32
CUX1-210ENST00000497815 IKZF4Q9H2S9 585 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 ST6GALNAC4Q9H4F1 302 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 MAPK8IP1Q9UQF2 711 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 GDAQ9Y2T3 454 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 PCDHB13Q9Y5F0 798 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 CNTNAP2Q9UHC6 1331 aa13.07□□□□□ -0.32
CUX1-210ENST00000497815 HNRNPDLO14979 420 aaKnown RBP13.06□□□□□ -0.32
CUX1-210ENST00000497815 PPP1R37O75864 691 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 MATR3P43243 847 aaKnown RBP eCLIP13.06□□□□□ -0.326e-7■■■■□ 23.8
CUX1-210ENST00000497815 SARSP49591 514 aaKnown RBP13.06□□□□□ -0.32
CUX1-210ENST00000497815 LIG4P49917 911 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 ALCAMQ13740 583 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 DSC3Q14574 896 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 PCBP1Q15365 356 aaKnown RBP eCLIP13.06□□□□□ -0.326e-6■■■■■ 34.5
CUX1-210ENST00000497815 C9orf50Q5SZB4 431 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 CCDC183Q5T5S1 534 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 L1TD1Q5T7N2 865 aaKnown RBP13.06□□□□□ -0.32
CUX1-210ENST00000497815 ATF7IP2Q5U623 682 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 EEF1DP3Q658K8 133 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 NOTUMQ6P988 496 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.06□□□□□ -0.321e-8■■■■□ 26.3
CUX1-210ENST00000497815 EPM2AIP1Q7L775 607 aaPredicted RBP13.06□□□□□ -0.32
CUX1-210ENST00000497815 ZBTB33Q86T24 672 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 RTN4RL1Q86UN2 441 aaPredicted RBP13.06□□□□□ -0.32
CUX1-210ENST00000497815 MAP4K3Q8IVH8 894 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 SYCP3Q8IZU3 236 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 SPATA20Q8TB22 786 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 LINC01599Q8WXQ3 324 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 HVCN1Q96D96 273 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 ACCSQ96QU6 501 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 TCHPQ9BT92 498 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 STRA6Q9BX79 667 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 FTHL17Q9BXU8 183 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 PDZD7Q9H5P4 517 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 TMEM63CQ9P1W3 806 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 KIAA1468Q9P260 1216 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 ANKFY1Q9P2R3 1169 aa13.06□□□□□ -0.32
CUX1-210ENST00000497815 MYH11P35749 1972 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 ABHD14A-ACY1A0A1B0GW23 586 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.05□□□□□ -0.32
CUX1-210ENST00000497815 TISP43B9A030 160 aa13.05□□□□□ -0.32
CUX1-210ENST00000497815 ENPP3O14638 875 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms