RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 TOX4O94842 621 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 CLEC2LP0C7M8 214 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 VSIG10L2P0DP72 767 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 HNRNPLP14866 589 aaKnown RBP eCLIP2.97□□□□□ -1.93
HMGB1-208ENST00000490788 ZNF20P17024 532 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 BPIP17213 487 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 ACO1P21399 889 aaKnown RBP2.97□□□□□ -1.93
HMGB1-208ENST00000490788 MSX2P35548 267 aaPredicted RBP2.97□□□□□ -1.93
HMGB1-208ENST00000490788 C1QTNF8P60827 252 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 MGAT5Q09328 741 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 RIN1Q13671 783 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 SPIDRQ14159 915 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 GAGE13Q4V321 117 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 EGFLAMQ63HQ2 1017 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 FAM180AQ6UWF9 173 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 GAREM2Q75VX8 874 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 KRT26Q7Z3Y9 468 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 ADGRE4PQ86SQ3 457 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 GSPT2Q8IYD1 628 aaKnown RBP2.97□□□□□ -1.93
HMGB1-208ENST00000490788 FUKQ8N0W3 1084 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 BCL6BQ8N143 479 aaPredicted RBP2.97□□□□□ -1.93
HMGB1-208ENST00000490788 OR14C36Q8NHC7 312 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 WDR66Q8TBY9 1149 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 Q8TCH9 128 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 PAWRQ96IZ0 340 aaKnown RBP2.97□□□□□ -1.93
HMGB1-208ENST00000490788 MPHOSPH9Q99550 1183 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 TCF25Q9BQ70 676 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 SSBP3Q9BWW4 388 aaPredicted RBP2.97□□□□□ -1.93
HMGB1-208ENST00000490788 OSBPL6Q9BZF3 934 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 PLA2G3Q9NZ20 509 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 NUMBLQ9Y6R0 609 aa2.97□□□□□ -1.93
HMGB1-208ENST00000490788 WASHC2AQ641Q2 1341 aa2.96□□□□□ -1.93
HMGB1-208ENST00000490788 SOGA1O94964 1423 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 SRCAPQ6ZRS2 3230 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 UBE2QL1A1L167 161 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 LCHNA4D1U4 455 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 C2orf78A6NCI8 922 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 CAPN14A8MX76 684 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 ALDH1A2O94788 518 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 PFKMP08237 780 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 MTHFD2P13995 350 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 INSRRP14616 1297 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 HIBADHP31937 336 aaKnown RBP2.96□□□□□ -1.94
HMGB1-208ENST00000490788 KIR2DL3P43628 341 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 ID4P47928 161 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 ADCY7P51828 1080 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 MANFP55145 182 aaKnown RBP2.96□□□□□ -1.94
HMGB1-208ENST00000490788 HGFACQ04756 655 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 CRHR2Q13324 411 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 PUM1Q14671 1186 aaKnown RBP eCLIP2.96□□□□□ -1.94
HMGB1-208ENST00000490788 STAT4Q14765 748 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 CT83Q5H943 113 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 ZBTB41Q5SVQ8 909 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 RNF219Q5W0B1 726 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-208ENST00000490788 MFSD5Q6N075 450 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 STRA8Q7Z7C7 330 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 CLEC14AQ86T13 490 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 SPATS2Q86XZ4 545 aaKnown RBP2.96□□□□□ -1.94
HMGB1-208ENST00000490788 UNC5BQ8IZJ1 945 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 THEMISQ8N1K5 641 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-208ENST00000490788 ANKRD35Q8N283 1001 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 DNERQ8NFT8 737 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 SH3RF3Q8TEJ3 882 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-208ENST00000490788 NKD2Q969F2 451 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-208ENST00000490788 AHCYL2Q96HN2 611 aaKnown RBP2.96□□□□□ -1.94
HMGB1-208ENST00000490788 RAX2Q96IS3 184 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 MS4A5Q9H3V2 200 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 IL23AQ9NPF7 189 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 TOPORSQ9NS56 1045 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-208ENST00000490788 WDR3Q9UNX4 943 aaKnown RBP eCLIP2.96□□□□□ -1.94
HMGB1-208ENST00000490788 TSC22D4Q9Y3Q8 395 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 PPP2R3BQ9Y5P8 575 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 SLC30A1Q9Y6M5 507 aa2.96□□□□□ -1.94
HMGB1-208ENST00000490788 UHRF1BP1Q6BDS2 1440 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 KIAA0586Q9BVV6 1533 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 MATN2O00339 956 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 PRAMEF4O60810 478 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 MFAP3LO75121 409 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 IPO13O94829 963 aaKnown RBP2.95□□□□□ -1.94
HMGB1-208ENST00000490788 LPLP06858 475 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 VIL1P09327 827 aaKnown RBP2.95□□□□□ -1.94
HMGB1-208ENST00000490788 GAAP10253 952 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 GNAT2P19087 354 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 LGALS4P56470 323 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 SCAND1P57086 179 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 DUSP2Q05923 314 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 FOXL1Q12952 345 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 ACAP1Q15027 740 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 FSCN1Q16658 493 aaKnown RBP2.95□□□□□ -1.94
HMGB1-208ENST00000490788 CPEB4Q17RY0 729 aaKnown RBP eCLIP2.95□□□□□ -1.94
HMGB1-208ENST00000490788 NRN1LQ496H8 165 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 FKBP15Q5T1M5 1219 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 FAM111BQ6SJ93 734 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 ZNF662Q6ZS27 426 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 AMOTL1Q8IY63 956 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 GPR135Q8IZ08 494 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 CMTM4Q8IZR5 234 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 FAM9AQ8IZU1 332 aaPredicted RBP2.95□□□□□ -1.94
HMGB1-208ENST00000490788 AFAP1L2Q8N4X5 818 aa2.95□□□□□ -1.94
HMGB1-208ENST00000490788 CLRN3Q8NCR9 226 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms