RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 PDCD1Q15116 288 aa6.74□□□□□ -1.33
PTPN4-212ENST00000488896 LSM12Q3MHD2 195 aaKnown RBP6.74□□□□□ -1.33
PTPN4-212ENST00000488896 CLRN3Q8NCR9 226 aa6.74□□□□□ -1.33
PTPN4-212ENST00000488896 OR5M3Q8NGP4 307 aa6.74□□□□□ -1.33
PTPN4-212ENST00000488896 PPP1R14CQ8TAE6 165 aa6.74□□□□□ -1.33
PTPN4-212ENST00000488896 ZNF512Q96ME7 567 aaPredicted RBP6.74□□□□□ -1.33
PTPN4-212ENST00000488896 SRRDQ9UH36 339 aa6.74□□□□□ -1.33
PTPN4-212ENST00000488896 EVLQ9UI08 416 aaPredicted RBP6.74□□□□□ -1.33
PTPN4-212ENST00000488896 PRSS50Q9UI38 385 aa6.74□□□□□ -1.33
PTPN4-212ENST00000488896 TMPRSS11EQ9UL52 423 aa6.74□□□□□ -1.33
PTPN4-212ENST00000488896 NUMBLQ9Y6R0 609 aa6.74□□□□□ -1.33
PTPN4-212ENST00000488896 CLSTN1O94985 981 aa6.73□□□□□ -1.33
PTPN4-212ENST00000488896 CNGA1P29973 690 aa6.73□□□□□ -1.33
PTPN4-212ENST00000488896 LGALS4P56470 323 aa6.73□□□□□ -1.33
PTPN4-212ENST00000488896 SPIDRQ14159 915 aa6.73□□□□□ -1.33
PTPN4-212ENST00000488896 PITRM1Q5JRX3 1037 aa6.73□□□□□ -1.33
PTPN4-212ENST00000488896 MIIPQ5JXC2 388 aa6.73□□□□□ -1.33
PTPN4-212ENST00000488896 IGFL4Q6B9Z1 124 aa6.73□□□□□ -1.33
PTPN4-212ENST00000488896 USP51Q70EK9 711 aa6.73□□□□□ -1.33
PTPN4-212ENST00000488896 LYSMD2Q8IV50 215 aa6.73□□□□□ -1.33
PTPN4-212ENST00000488896 UNC5BQ8IZJ1 945 aa6.73□□□□□ -1.33
PTPN4-212ENST00000488896 EAF2Q96CJ1 260 aaPredicted RBP6.73□□□□□ -1.33
PTPN4-212ENST00000488896 GPR87Q9BY21 358 aa6.73□□□□□ -1.33
PTPN4-212ENST00000488896 KCTD10Q9H3F6 313 aa6.73□□□□□ -1.33
PTPN4-212ENST00000488896 ZEB2O60315 1214 aa6.72□□□□□ -1.33
PTPN4-212ENST00000488896 ULK1O75385 1050 aa6.72□□□□□ -1.33
PTPN4-212ENST00000488896 SEC24DO94855 1032 aaPredicted RBP6.72□□□□□ -1.33
PTPN4-212ENST00000488896 GPR15P49685 360 aa6.72□□□□□ -1.33
PTPN4-212ENST00000488896 GLB1L2Q8IW92 636 aa6.72□□□□□ -1.33
PTPN4-212ENST00000488896 MSL3Q8N5Y2 521 aaKnown RBP6.72□□□□□ -1.33
PTPN4-212ENST00000488896 OR14C36Q8NHC7 312 aa6.72□□□□□ -1.33
PTPN4-212ENST00000488896 ATXN2LQ8WWM7 1075 aaKnown RBP6.72□□□□□ -1.33
PTPN4-212ENST00000488896 APOBEC2Q9Y235 224 aaKnown RBP6.72□□□□□ -1.33
PTPN4-212ENST00000488896 KRTAP23-1A1A580 65 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 MTSS1O43312 755 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 PRAMEF4O60810 478 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 MFAP3LO75121 409 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 ZNF202O95125 648 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 CFBP00751 764 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 GNAT2P19087 354 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 HK1P19367 917 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 CANXP27824 592 aaKnown RBP6.71□□□□□ -1.34
PTPN4-212ENST00000488896 MAN2A2P49641 1150 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 SESN3P58005 492 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 TMPRSS15P98073 1019 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 DUSP2Q05923 314 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 UBE3CQ15386 1083 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 UGT8Q16880 541 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 MFSD5Q6N075 450 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 TMPRSS6Q8IU80 811 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 CMIPQ8IY22 773 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 TGFBRAP1Q8WUH2 860 aa6.71□□□□□ -1.34
PTPN4-212ENST00000488896 NRP1O14786 923 aa6.7□□□□□ -1.34
PTPN4-212ENST00000488896 CCT2P78371 535 aaKnown RBP6.7□□□□□ -1.34
PTPN4-212ENST00000488896 CCDC178Q5BJE1 867 aa6.7□□□□□ -1.34
PTPN4-212ENST00000488896 IQSEC1Q6DN90 963 aa6.7□□□□□ -1.34
PTPN4-212ENST00000488896 TAS1R1Q7RTX1 841 aa6.7□□□□□ -1.34
PTPN4-212ENST00000488896 CACTINQ8WUQ7 758 aaKnown RBP6.7□□□□□ -1.34
PTPN4-212ENST00000488896 WNT8AQ9H1J5 351 aa6.7□□□□□ -1.34
PTPN4-212ENST00000488896 PARPBPQ9NWS1 579 aa6.7□□□□□ -1.34
PTPN4-212ENST00000488896 AURKAIP1Q9NWT8 199 aaPredicted RBP6.7□□□□□ -1.34
PTPN4-212ENST00000488896 CEP72Q9P209 647 aa6.7□□□□□ -1.34
PTPN4-212ENST00000488896 DPP7Q9UHL4 492 aa6.7□□□□□ -1.34
PTPN4-212ENST00000488896 REXO2Q9Y3B8 237 aaKnown RBP6.7□□□□□ -1.34
PTPN4-212ENST00000488896 A0A1W2PR48 441 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 GOLGA8AA7E2F4 631 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 HOXA3O43365 443 aaPredicted RBP6.69□□□□□ -1.34
PTPN4-212ENST00000488896 FAM20BO75063 409 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 IPO13O94829 963 aaKnown RBP6.69□□□□□ -1.34
PTPN4-212ENST00000488896 SLPIP03973 132 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 ACVRL1P37023 503 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 SCAND1P57086 179 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 CDK17Q00537 523 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 KLF10Q13118 480 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 TUBA3CQ13748 450 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 STAT4Q14765 748 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 TUBA3EQ6PEY2 450 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 LHFPL2Q6ZUX7 228 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 SLC41A1Q8IVJ1 513 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 RSAD2Q8WXG1 361 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 ST8SIA2Q92186 375 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 CPPED1Q9BRF8 314 aaPredicted RBP6.69□□□□□ -1.34
PTPN4-212ENST00000488896 VTA1Q9NP79 307 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 SLC2A4RGQ9NR83 387 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 ING1Q9UK53 422 aaPredicted RBP6.69□□□□□ -1.34
PTPN4-212ENST00000488896 CDY2AQ9Y6F7 541 aa6.69□□□□□ -1.34
PTPN4-212ENST00000488896 IGSF3O75054 1194 aa6.68□□□□□ -1.34
PTPN4-212ENST00000488896 LTA4HP09960 611 aaKnown RBP6.68□□□□□ -1.34
PTPN4-212ENST00000488896 RABGGTBP53611 331 aa6.68□□□□□ -1.34
PTPN4-212ENST00000488896 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.68□□□□□ -1.34
PTPN4-212ENST00000488896 ABHD15Q6UXT9 468 aa6.68□□□□□ -1.34
PTPN4-212ENST00000488896 AFAP1L2Q8N4X5 818 aa6.68□□□□□ -1.34
PTPN4-212ENST00000488896 MDGA1Q8NFP4 955 aa6.68□□□□□ -1.34
PTPN4-212ENST00000488896 IL17RAQ96F46 866 aa6.68□□□□□ -1.34
PTPN4-212ENST00000488896 MNTQ99583 582 aa6.68□□□□□ -1.34
PTPN4-212ENST00000488896 QRSL1Q9H0R6 528 aaKnown RBP6.68□□□□□ -1.34
PTPN4-212ENST00000488896 KLRG2A4D1S0 409 aaPredicted RBP6.67□□□□□ -1.34
PTPN4-212ENST00000488896 CYR61O00622 381 aa6.67□□□□□ -1.34
PTPN4-212ENST00000488896 NARSO43776 548 aaKnown RBP6.67□□□□□ -1.34
PTPN4-212ENST00000488896 BRINP1O60477 761 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms