RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 TET1Q8NFU7 2136 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 SIP14410 1827 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 A0A1W2PQ27 194 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 A0A1W2PQ64 194 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 A0A1W2PQD8 194 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 K7ERI5 159 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 ACKR2O00590 384 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 ZNF623O75123 536 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 BTG3Q14201 252 aaPredicted RBP16.13■□□□□ 0.17
LIMS3-205ENST00000487150 NAALADL2Q58DX5 795 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 SLC27A1Q6PCB7 646 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 GLB1LQ6UWU2 654 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 RTN4RL1Q86UN2 441 aaPredicted RBP16.13■□□□□ 0.17
LIMS3-205ENST00000487150 FIBCD1Q8N539 461 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 DEFB123Q8N688 67 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 PDILTQ8N807 584 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 TGS1Q96RS0 853 aaKnown RBP16.13■□□□□ 0.17
LIMS3-205ENST00000487150 MRPL4Q9BYD3 311 aaKnown RBP16.13■□□□□ 0.17
LIMS3-205ENST00000487150 TMEM117Q9H0C3 514 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 CCDC113Q9H0I3 377 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 KCNH3Q9ULD8 1083 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 ZMYM2Q9UBW7 1377 aa16.13■□□□□ 0.17
LIMS3-205ENST00000487150 HOXA11P31270 313 aaPredicted RBP16.12■□□□□ 0.17
LIMS3-205ENST00000487150 RAD51AP2Q09MP3 1159 aa16.12■□□□□ 0.17
LIMS3-205ENST00000487150 ALCAMQ13740 583 aa16.12■□□□□ 0.17
LIMS3-205ENST00000487150 AMHR2Q16671 573 aa16.12■□□□□ 0.17
LIMS3-205ENST00000487150 DCAF4L1Q3SXM0 396 aa16.12■□□□□ 0.17
LIMS3-205ENST00000487150 ARSHQ5FYA8 562 aa16.12■□□□□ 0.17
LIMS3-205ENST00000487150 CRIPAKQ8N1N5 446 aa16.12■□□□□ 0.17
LIMS3-205ENST00000487150 LRRC43Q8N309 656 aa16.12■□□□□ 0.17
LIMS3-205ENST00000487150 MYCT1Q8N699 235 aa16.12■□□□□ 0.17
LIMS3-205ENST00000487150 DDX12PQ92771 950 aa16.12■□□□□ 0.17
LIMS3-205ENST00000487150 DHX58Q96C10 678 aa16.12■□□□□ 0.17
LIMS3-205ENST00000487150 ZNF689Q96CS4 500 aaPredicted RBP16.12■□□□□ 0.17
LIMS3-205ENST00000487150 MICAL3Q7RTP6 2002 aa16.12■□□□□ 0.17
LIMS3-205ENST00000487150 EVPLQ92817 2033 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 A0A1B0GUA9 196 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 LINC01553A4QN01 128 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 POLR2DO15514 142 aaKnown RBP16.11■□□□□ 0.17
LIMS3-205ENST00000487150 MYL1P05976 194 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 MAPTP10636 758 aaKnown RBP16.11■□□□□ 0.17
LIMS3-205ENST00000487150 ARF4P18085 180 aaPredicted RBP16.11■□□□□ 0.17
LIMS3-205ENST00000487150 TAP1Q03518 808 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 GIT2Q14161 759 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 E2F4Q16254 413 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 STXBP4Q6ZWJ1 553 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 TMCO2Q7Z6W1 182 aaPredicted RBP16.11■□□□□ 0.17
LIMS3-205ENST00000487150 FAM178BQ8IXR5 827 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 CCDC65Q8IXS2 484 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 RNF169Q8NCN4 708 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 MRPS27Q92552 414 aaKnown RBP16.11■□□□□ 0.17
LIMS3-205ENST00000487150 HVCN1Q96D96 273 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 KIFC3Q9BVG8 833 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 ZHX3Q9H4I2 956 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 RC3H2Q9HBD1 1191 aaKnown RBP16.11■□□□□ 0.17
LIMS3-205ENST00000487150 AAASQ9NRG9 546 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 KBTBD4Q9NVX7 518 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 PCDHB2Q9Y5E7 798 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 MYH15Q9Y2K3 1946 aa16.11■□□□□ 0.17
LIMS3-205ENST00000487150 A0A087X0B3 334 aa16.1■□□□□ 0.17
LIMS3-205ENST00000487150 K7ENM7 598 aa16.1■□□□□ 0.17
LIMS3-205ENST00000487150 SLC16A4O15374 487 aa16.1■□□□□ 0.17
LIMS3-205ENST00000487150 TRAK2O60296 914 aa16.1■□□□□ 0.17
LIMS3-205ENST00000487150 LIG1P18858 919 aa16.1■□□□□ 0.17
LIMS3-205ENST00000487150 IBSPP21815 317 aaPredicted RBP16.1■□□□□ 0.17
LIMS3-205ENST00000487150 NCKAP1LP55160 1127 aa16.1■□□□□ 0.17
LIMS3-205ENST00000487150 CNNM4Q6P4Q7 775 aa16.1■□□□□ 0.17
LIMS3-205ENST00000487150 ZPBP2Q6X784 338 aa16.1■□□□□ 0.17
LIMS3-205ENST00000487150 ZNF598Q86UK7 904 aaKnown RBP16.1■□□□□ 0.17
LIMS3-205ENST00000487150 TMEM161BQ8NDZ6 487 aa16.1■□□□□ 0.17
LIMS3-205ENST00000487150 URGCPQ8TCY9 931 aa16.1■□□□□ 0.17
LIMS3-205ENST00000487150 LRRC15Q8TF66 581 aa16.1■□□□□ 0.17
LIMS3-205ENST00000487150 GAS2L1Q99501 681 aaPredicted RBP16.1■□□□□ 0.17
LIMS3-205ENST00000487150 PLVAPQ9BX97 442 aa16.1■□□□□ 0.17
LIMS3-205ENST00000487150 SEMA6BQ9H3T3 888 aa16.1■□□□□ 0.17
LIMS3-205ENST00000487150 OLFML3Q9NRN5 406 aa16.1■□□□□ 0.17
LIMS3-205ENST00000487150 KANSL3Q9P2N6 904 aa16.1■□□□□ 0.17
LIMS3-205ENST00000487150 FAM237AA0A1B0GTK4 181 aa16.09■□□□□ 0.17
LIMS3-205ENST00000487150 TBKBP1A7MCY6 615 aa16.09■□□□□ 0.17
LIMS3-205ENST00000487150 B4GALT5O43286 388 aa16.09■□□□□ 0.17
LIMS3-205ENST00000487150 RB1P06400 928 aa16.09■□□□□ 0.17
LIMS3-205ENST00000487150 SLFN14P0C7P3 912 aa16.09■□□□□ 0.17
LIMS3-205ENST00000487150 MYOGP15173 224 aa16.09■□□□□ 0.17
LIMS3-205ENST00000487150 PFKFB1P16118 471 aa16.09■□□□□ 0.17
LIMS3-205ENST00000487150 SYKP43405 635 aa16.09■□□□□ 0.17
LIMS3-205ENST00000487150 ERVK-21P61565 698 aa16.09■□□□□ 0.17
LIMS3-205ENST00000487150 ATF7IP2Q5U623 682 aa16.09■□□□□ 0.17
LIMS3-205ENST00000487150 DYMQ7RTS9 669 aa16.09■□□□□ 0.17
LIMS3-205ENST00000487150 MRPL10Q7Z7H8 261 aaKnown RBP16.09■□□□□ 0.17
LIMS3-205ENST00000487150 CLP1Q92989 425 aaKnown RBP16.09■□□□□ 0.17
LIMS3-205ENST00000487150 C11orf84Q9BUA3 381 aaPredicted RBP16.09■□□□□ 0.17
LIMS3-205ENST00000487150 PANK2Q9BZ23 570 aa16.09■□□□□ 0.17
LIMS3-205ENST00000487150 TTYH1Q9H313 450 aaPredicted RBP16.09■□□□□ 0.17
LIMS3-205ENST00000487150 ST6GALNAC4Q9H4F1 302 aa16.09■□□□□ 0.17
LIMS3-205ENST00000487150 TNFSF13BQ9Y275 285 aa16.09■□□□□ 0.17
LIMS3-205ENST00000487150 NPHP3-ACAD11A0A0J9YXS1 232 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 LCHNA4D1U4 455 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 MYMKA6NI61 221 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 SFI1A8K8P3 1242 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 FGFR1P11362 822 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms