RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 MAEAQ7L5Y9 396 aa9.06□□□□□ -0.96
SYNE1-225ENST00000481502 FILIP1Q7Z7B0 1213 aa9.06□□□□□ -0.96
SYNE1-225ENST00000481502 UBE2Q1Q7Z7E8 422 aa9.06□□□□□ -0.96
SYNE1-225ENST00000481502 FAM114A1Q8IWE2 563 aa9.06□□□□□ -0.96
SYNE1-225ENST00000481502 SYCP3Q8IZU3 236 aa9.06□□□□□ -0.96
SYNE1-225ENST00000481502 DNAJB3Q8WWF6 145 aa9.06□□□□□ -0.96
SYNE1-225ENST00000481502 NLRP7Q8WX94 980 aa9.06□□□□□ -0.96
SYNE1-225ENST00000481502 RSPH1Q8WYR4 309 aa9.06□□□□□ -0.96
SYNE1-225ENST00000481502 CTAGE1Q96RT6 745 aa9.06□□□□□ -0.96
SYNE1-225ENST00000481502 TRAIPQ9BWF2 469 aa9.06□□□□□ -0.96
SYNE1-225ENST00000481502 MRPL4Q9BYD3 311 aaKnown RBP9.06□□□□□ -0.96
SYNE1-225ENST00000481502 GZF1Q9H116 711 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-225ENST00000481502 THAP9Q9H5L6 903 aa9.06□□□□□ -0.96
SYNE1-225ENST00000481502 TNFSF13BQ9Y275 285 aa9.06□□□□□ -0.96
SYNE1-225ENST00000481502 GDAQ9Y2T3 454 aa9.06□□□□□ -0.96
SYNE1-225ENST00000481502 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-225ENST00000481502 TRPV2Q9Y5S1 764 aa9.06□□□□□ -0.96
SYNE1-225ENST00000481502 MYH11P35749 1972 aa9.06□□□□□ -0.96
SYNE1-225ENST00000481502 A0A087WZ62 844 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 A0A1B0GUA9 196 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 LRRC10BA6NIK2 292 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 GOLGA6L19H0YKK7 550 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 CETN3O15182 167 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 SRGAP2CP0DJJ0 459 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 EEF1GP26641 437 aaKnown RBP9.05□□□□□ -0.96
SYNE1-225ENST00000481502 RFC2P35250 354 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 MARSP56192 900 aaKnown RBP9.05□□□□□ -0.96
SYNE1-225ENST00000481502 MBTD1Q05BQ5 628 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 PPP2R3AQ06190 1150 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 MGAT3Q09327 533 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 HIC1Q14526 733 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 SMYD5Q6GMV2 418 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 TTI2Q6NXR4 508 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 USP37Q86T82 979 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 NELFBQ8WX92 580 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 NLRP4Q96MN2 994 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 TSPAN18Q96SJ8 248 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 FDXACB1Q9BRP7 624 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-225ENST00000481502 DNAJC25Q9H1X3 360 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 METTL14Q9HCE5 456 aaKnown RBP9.05□□□□□ -0.96
SYNE1-225ENST00000481502 DMAC2Q9NW81 257 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 ADGRA3Q8IWK6 1321 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 CNTNAP2Q9UHC6 1331 aa9.05□□□□□ -0.96
SYNE1-225ENST00000481502 EVPLQ92817 2033 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 INO80B-WBP1J3KQ70 363 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 SLC16A3O15427 465 aaKnown RBP9.04□□□□□ -0.96
SYNE1-225ENST00000481502 TGFB1I1O43294 461 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 B4GALT4O60513 344 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 ERLIN2O94905 339 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 PRPF6O94906 941 aaKnown RBP9.04□□□□□ -0.96
SYNE1-225ENST00000481502 VTNP04004 478 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 PRKCBP05771 671 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 MYBP10242 640 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 SKIP12755 728 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 CD44P16070 742 aaKnown RBP9.04□□□□□ -0.96
SYNE1-225ENST00000481502 SELPP16109 830 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 PROZP22891 400 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 HOXD13P35453 343 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 LIG4P49917 911 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 CASP5P51878 434 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 CHMP4BP1P59074 171 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 ZNF200P98182 395 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-225ENST00000481502 MCL1Q07820 350 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 ADAM9Q13443 819 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 PRPF4BQ13523 1007 aaKnown RBP9.04□□□□□ -0.96
SYNE1-225ENST00000481502 NCAPHQ15003 741 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 TPD52L1Q16890 204 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-225ENST00000481502 ZC2HC1CQ53FD0 456 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-225ENST00000481502 ANKRD40Q6AI12 368 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 ISM2Q6H9L7 571 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 RUFY4Q6ZNE9 571 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 CSGALNACT2Q8N6G5 542 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 ANKRD20A12PQ8NF67 263 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 APBB2Q92870 758 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 PAWRQ96IZ0 340 aaKnown RBP9.04□□□□□ -0.96
SYNE1-225ENST00000481502 FBXL18Q96ME1 805 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 SCLT1Q96NL6 688 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 ACO2Q99798 780 aaKnown RBP9.04□□□□□ -0.96
SYNE1-225ENST00000481502 ADPGKQ9BRR6 497 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 FTHL17Q9BXU8 183 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 FAM49AQ9H0Q0 323 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-225ENST00000481502 SEMA6BQ9H3T3 888 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 PTPRHQ9HD43 1115 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 AGPAT3Q9NRZ7 376 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 CDY2AQ9Y6F7 541 aa9.04□□□□□ -0.96
SYNE1-225ENST00000481502 ZMYM2Q9UBW7 1377 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 A0A0B4J269 797 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 HNRNPDLO14979 420 aaKnown RBP9.03□□□□□ -0.96
SYNE1-225ENST00000481502 N4BP3O15049 544 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 CLDN3O15551 220 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 RPS6KA5O75582 802 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 CHRNA1P02708 482 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 PFKMP08237 780 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 MCF2P10911 925 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 CKBP12277 381 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 THPOP40225 353 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 RAB27AP51159 221 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 SOX10P56693 466 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 FAAP100Q0VG06 881 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 GSE1Q14687 1217 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms