RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.46□□□□□ -0.09
USP42-206ENST00000479544 SPIRE2Q8WWL2 714 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 EDEM3Q9BZQ6 932 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 BATF3Q9NR55 127 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 SERPINB13Q9UIV8 391 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 SALL4Q9UJQ4 1053 aa14.46□□□□□ -0.09
USP42-206ENST00000479544 ATF5Q9Y2D1 282 aaPredicted RBP14.46□□□□□ -0.09
USP42-206ENST00000479544 ZCCHC18P0CG32 403 aa14.46□□□□□ -0.1
USP42-206ENST00000479544 KLRK1P26718 216 aa14.46□□□□□ -0.1
USP42-206ENST00000479544 FLT3P36888 993 aa14.46□□□□□ -0.1
USP42-206ENST00000479544 ICA1Q05084 483 aa14.46□□□□□ -0.1
USP42-206ENST00000479544 IL17AQ16552 155 aa14.46□□□□□ -0.1
USP42-206ENST00000479544 MEA1Q16626 185 aa14.46□□□□□ -0.1
USP42-206ENST00000479544 AGAP11Q8TF27 550 aa14.46□□□□□ -0.1
USP42-206ENST00000479544 PYROXD1Q8WU10 500 aa14.46□□□□□ -0.1
USP42-206ENST00000479544 CFAP57Q96MR6 1250 aa14.46□□□□□ -0.1
USP42-206ENST00000479544 TSNARE1Q96NA8 513 aa14.46□□□□□ -0.1
USP42-206ENST00000479544 MTA3Q9BTC8 594 aa14.46□□□□□ -0.1
USP42-206ENST00000479544 THAP2Q9H0W7 228 aa14.46□□□□□ -0.1
USP42-206ENST00000479544 DHX36Q9H2U1 1008 aaKnown RBP14.46□□□□□ -0.1
USP42-206ENST00000479544 CYP4F11Q9HBI6 524 aa14.46□□□□□ -0.1
USP42-206ENST00000479544 MARCOQ9UEW3 520 aaPredicted RBP14.46□□□□□ -0.1
USP42-206ENST00000479544 HNRNPDLO14979 420 aaKnown RBP14.45□□□□□ -0.1
USP42-206ENST00000479544 TRAPPC3O43617 180 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 TTLL1O95922 423 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 ARL1P40616 181 aaPredicted RBP14.45□□□□□ -0.1
USP42-206ENST00000479544 SERPINB4P48594 390 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 KDSRQ06136 332 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 GRB10Q13322 594 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 CENPPQ6IPU0 288 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 FGD4Q96M96 766 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 TMEM237Q96Q45 408 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 AMNQ9BXJ7 453 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 KNDC1Q76NI1 1749 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 F8VZ95 297 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 PPP1R12AO14974 1030 aaPredicted RBP14.45□□□□□ -0.1
USP42-206ENST00000479544 CYP26A1O43174 497 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 HAUS5O94927 633 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 SHBGP04278 402 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 ASPRV1Q53RT3 343 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 MEI1Q5TIA1 1274 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 AADACL2Q6P093 401 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 ZBED8Q8IZ13 594 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 FBXL16Q8N461 479 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 ZNF507Q8TCN5 953 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 TEKT4Q8WW24 435 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 C11orf70Q9BRQ4 267 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 GLT8D2Q9H1C3 349 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 TRIM33Q9UPN9 1127 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 ITSN1Q15811 1721 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 TESPA1A2RU30 521 aaPredicted RBP14.45□□□□□ -0.1
USP42-206ENST00000479544 FAM187AA6NFU0 413 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 DCTN3O75935 186 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 COMTP21964 271 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 PHBP35232 272 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 SOX5P35711 763 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 ALDH5A1P51649 535 aaPredicted RBP14.45□□□□□ -0.1
USP42-206ENST00000479544 ITGB3BPQ13352 177 aaPredicted RBP14.45□□□□□ -0.1
USP42-206ENST00000479544 CERKLQ49MI3 558 aaPredicted RBP14.45□□□□□ -0.1
USP42-206ENST00000479544 PREPLQ4J6C6 727 aaPredicted RBP14.45□□□□□ -0.1
USP42-206ENST00000479544 PLA2G12BQ9BX93 195 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 IFT122Q9HBG6 1241 aa14.45□□□□□ -0.1
USP42-206ENST00000479544 BSDC1Q9NW68 430 aaPredicted RBP14.45□□□□□ -0.1
USP42-206ENST00000479544 FOXP2O15409 715 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 ORC4O43929 436 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 TOM1L1O75674 476 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 MFAP3P55082 362 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 ELF3P78545 371 aaPredicted RBP14.44□□□□□ -0.1
USP42-206ENST00000479544 MAP7D1Q3KQU3 841 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 NXNQ6DKJ4 435 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 IQCKQ8N0W5 287 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 LRRC43Q8N309 656 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 DNAJC9Q8WXX5 260 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 ELMO3Q96BJ8 720 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 VCX3AQ9NNX9 186 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 MIF4GDA9UHW6 222 aaKnown RBP14.44□□□□□ -0.1
USP42-206ENST00000479544 AP1G2O75843 785 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 KRT1P04264 644 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 NAALADL2Q58DX5 795 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 KCNV1Q6PIU1 500 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 CALN1Q9BXU9 219 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 TRIM55Q9BYV6 548 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 FAM129AQ9BZQ8 928 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 INTS2Q9H0H0 1204 aaKnown RBP14.44□□□□□ -0.1
USP42-206ENST00000479544 PNMA6FA0A0J9YX94 578 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 RSPH10B2B2RC85 870 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 DNM1LO00429 736 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 CFLARO15519 480 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 ZBTB7AO95365 584 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 RSPH10BP0C881 870 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 GNAT1P11488 350 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 CD58P19256 250 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 SLC8A3P57103 927 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 C1orf146Q5VVC0 180 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 RBM17Q96I25 401 aaKnown RBP14.44□□□□□ -0.1
USP42-206ENST00000479544 ANKFY1Q9P2R3 1169 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 FAF1Q9UNN5 650 aaPredicted RBP14.44□□□□□ -0.1
USP42-206ENST00000479544 TRPC3Q13507 836 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 THEMIS2Q5TEJ8 643 aa14.44□□□□□ -0.1
USP42-206ENST00000479544 IZUMO3Q5VZ72 239 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms