RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 LMBR1Q8WVP7 490 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 SEPT1Q8WYJ6 367 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 INTS2Q9H0H0 1204 aaKnown RBP8.28□□□□□ -1.08
COL6A3-208ENST00000468792 PORCNQ9H237 461 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 TMEM134Q9H6X4 195 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 ELP3Q9H9T3 547 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 POLD4Q9HCU8 107 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 XPNPEP1Q9NQW7 623 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 ZNF302Q9NR11 478 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 OGFRQ9NZT2 677 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 RBPJLQ9UBG7 517 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 TRIM10Q9UDY6 481 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 ADAMTS1Q9UHI8 967 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 PNMA3Q9UL41 463 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 DUSP10Q9Y6W6 482 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 ARID2Q68CP9 1835 aa8.28□□□□□ -1.08
COL6A3-208ENST00000468792 GSTTP1A0A1W2PQM5 241 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 SLC16A4O15374 487 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 GRIN3BO60391 1043 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 MAFO75444 373 aaPredicted RBP8.27□□□□□ -1.09
COL6A3-208ENST00000468792 ATP1A1P05023 1023 aaKnown RBP8.27□□□□□ -1.09
COL6A3-208ENST00000468792 ERCC3P19447 782 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 ATP4AP20648 1035 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 UBA1P22314 1058 aaKnown RBP8.27□□□□□ -1.09
COL6A3-208ENST00000468792 GPC3P51654 580 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 CLCN6P51797 869 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 HADHBP55084 474 aaKnown RBP8.27□□□□□ -1.09
COL6A3-208ENST00000468792 CNTN2Q02246 1040 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 PDAP1Q13442 181 aaKnown RBP8.27□□□□□ -1.09
COL6A3-208ENST00000468792 SNAPC2Q13487 334 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 SNRNP35Q16560 246 aaKnown RBP8.27□□□□□ -1.09
COL6A3-208ENST00000468792 KIAA0753Q2KHM9 967 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 PLA2G4FQ68DD2 849 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 KRT39Q6A163 491 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 SLFN12LQ6IEE8 588 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 ALKBH5Q6P6C2 394 aaKnown RBP8.27□□□□□ -1.09
COL6A3-208ENST00000468792 TMCO3Q6UWJ1 677 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 GADL1Q6ZQY3 521 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 CYFIP1Q7L576 1253 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 ENOSF1Q7L5Y1 443 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 SLFN11Q7Z7L1 901 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 CREG2Q8IUH2 290 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 KSR1Q8IVT5 923 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 PARD3BQ8TEW8 1205 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 SLC7A3Q8WY07 619 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 OTUD5Q96G74 571 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 JPH2Q9BR39 696 aaPredicted RBP8.27□□□□□ -1.09
COL6A3-208ENST00000468792 CBWD1Q9BRT8 395 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 GPR88Q9GZN0 384 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 TAF1DQ9H5J8 278 aaPredicted RBP8.27□□□□□ -1.09
COL6A3-208ENST00000468792 TMEM8AQ9HCN3 771 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 GPRC5CQ9NQ84 441 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 DNAJC12Q9UKB3 198 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 HYOU1Q9Y4L1 999 aa8.27□□□□□ -1.09
COL6A3-208ENST00000468792 MYH9P35579 1960 aaKnown RBP8.27□□□□□ -1.09
COL6A3-208ENST00000468792 IGKV6-21A0A0C4DH24 114 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 MACROD2A1Z1Q3 448 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 GRID2IPA4D2P6 1211 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 ASB14A6NK59 587 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 CCDC169A6NNP5 214 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 SOCS7O14512 581 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 EXTL3O43909 919 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 EVI5O60447 810 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 ERLIN1O75477 346 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 LDHAP00338 332 aaKnown RBP8.26□□□□□ -1.09
COL6A3-208ENST00000468792 H2AFZP0C0S5 128 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 GZMAP12544 262 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 ZSCAN20P17040 1043 aaPredicted RBP8.26□□□□□ -1.09
COL6A3-208ENST00000468792 MXI1P50539 228 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 STAT5BP51692 787 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 EFNA5P52803 228 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 POLGP54098 1239 aaPredicted RBP8.26□□□□□ -1.09
COL6A3-208ENST00000468792 CCNA1P78396 465 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 CYP24A1Q07973 514 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 PPP3CAQ08209 521 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 GRM1Q13255 1194 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 IRF5Q13568 498 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 PRKG1Q13976 671 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 KCTD2Q14681 263 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 DRAP1Q14919 205 aaPredicted RBP8.26□□□□□ -1.09
COL6A3-208ENST00000468792 EMC2Q15006 297 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 GLE1Q53GS7 698 aaKnown RBP8.26□□□□□ -1.09
COL6A3-208ENST00000468792 CELF3Q5SZQ8 465 aaKnown RBP8.26□□□□□ -1.09
COL6A3-208ENST00000468792 MEI1Q5TIA1 1274 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 IER5Q5VY09 327 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 PHLDB3Q6NSJ2 640 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 CCDC62Q6P9F0 684 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 ZPBP2Q6X784 338 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 C15orf39Q6ZRI6 1047 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 H2AFVQ71UI9 128 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 NCAPG2Q86XI2 1143 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 SYCE1Q8N0S2 351 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 GPD1LQ8N335 351 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 MMGT1Q8N4V1 131 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 OLIG1Q8TAK6 271 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 BSNDQ8WZ55 320 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 DHX38Q92620 1227 aaKnown RBP8.26□□□□□ -1.09
COL6A3-208ENST00000468792 OPTNQ96CV9 577 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 CLMNQ96JQ2 1002 aa8.26□□□□□ -1.09
COL6A3-208ENST00000468792 FGD4Q96M96 766 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms