RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 SLC13A4Q9UKG4 626 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 DIS3Q9Y2L1 958 aaKnown RBP18.29■□□□□ 0.52
PTPRF-209ENST00000438120 EPM2AIP1Q7L775 607 aaPredicted RBP18.29■□□□□ 0.52
PTPRF-209ENST00000438120 SYT2Q8N9I0 419 aaPredicted RBP18.29■□□□□ 0.52
PTPRF-209ENST00000438120 SPON2Q9BUD6 331 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 ELP3Q9H9T3 547 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 SYNDIG1LA6NDD5 238 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 ELMOD1Q8N336 334 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 URGCPQ8TCY9 931 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 OSBPL9Q96SU4 736 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 KLHL11Q9NVR0 708 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 SNX19Q92543 992 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 FAM205CA6NFA0 338 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 H0Y3Z8 333 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 STOX1Q6ZVD7 989 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 RNF135Q8IUD6 432 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 DHX40Q8IX18 779 aaKnown RBP18.28■□□□□ 0.52
PTPRF-209ENST00000438120 GPD1LQ8N335 351 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 AGO2Q9UKV8 859 aaKnown RBP18.28■□□□□ 0.52
PTPRF-209ENST00000438120 SUGT1Q9Y2Z0 365 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 SLC9A2Q9UBY0 812 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 AFF4Q9UHB7 1163 aaKnown RBP18.28■□□□□ 0.52
PTPRF-209ENST00000438120 MAGOHP61326 146 aaKnown RBP18.28■□□□□ 0.52
PTPRF-209ENST00000438120 DPYSL4O14531 572 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 NOP14P78316 857 aaKnown RBP18.28■□□□□ 0.52
PTPRF-209ENST00000438120 HEATR6Q6AI08 1181 aaKnown RBP18.28■□□□□ 0.52
PTPRF-209ENST00000438120 HAUS6Q7Z4H7 955 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 TTC13Q8NBP0 860 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 RNF149Q8NC42 400 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 TBXAS1P24557 533 aaPredicted RBP18.28■□□□□ 0.52
PTPRF-209ENST00000438120 PMS2P54278 862 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 KCNA1Q09470 495 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 ZC3H18Q86VM9 953 aaKnown RBP18.28■□□□□ 0.52
PTPRF-209ENST00000438120 ZBED8Q8IZ13 594 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 ATXN7L3BQ96GX2 97 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 GCOM2Q9BZD3 368 aaPredicted RBP18.28■□□□□ 0.52
PTPRF-209ENST00000438120 SLC13A1Q9BZW2 595 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 C2orf40Q9H1Z8 148 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 SUN2Q9UH99 717 aa18.28■□□□□ 0.52
PTPRF-209ENST00000438120 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.28■□□□□ 0.52
PTPRF-209ENST00000438120 A0A0G2JLW4 131 aa18.27■□□□□ 0.52
PTPRF-209ENST00000438120 GUCY2CP25092 1073 aa18.27■□□□□ 0.52
PTPRF-209ENST00000438120 BEND6Q5SZJ8 279 aaPredicted RBP18.27■□□□□ 0.52
PTPRF-209ENST00000438120 SERPINI1Q99574 410 aa18.27■□□□□ 0.52
PTPRF-209ENST00000438120 DCTN4Q9UJW0 460 aa18.27■□□□□ 0.52
PTPRF-209ENST00000438120 KRT38O76015 456 aa18.27■□□□□ 0.52
PTPRF-209ENST00000438120 CPB1P15086 417 aa18.27■□□□□ 0.52
PTPRF-209ENST00000438120 PDIA2Q13087 525 aaKnown RBP18.27■□□□□ 0.52
PTPRF-209ENST00000438120 TRIM55Q9BYV6 548 aa18.27■□□□□ 0.52
PTPRF-209ENST00000438120 YWHABP31946 246 aaKnown RBP18.27■□□□□ 0.52
PTPRF-209ENST00000438120 ANKRD40Q6AI12 368 aa18.27■□□□□ 0.52
PTPRF-209ENST00000438120 WDR75Q8IWA0 830 aaKnown RBP18.27■□□□□ 0.52
PTPRF-209ENST00000438120 ABCA8O94911 1581 aa18.27■□□□□ 0.52
PTPRF-209ENST00000438120 TUBB6Q9BUF5 446 aa18.27■□□□□ 0.51
PTPRF-209ENST00000438120 CYP26A1O43174 497 aa18.27■□□□□ 0.51
PTPRF-209ENST00000438120 COPS2P61201 443 aa18.27■□□□□ 0.51
PTPRF-209ENST00000438120 CAPRIN1Q14444 709 aaKnown RBP18.27■□□□□ 0.51
PTPRF-209ENST00000438120 LRRC14Q15048 493 aa18.27■□□□□ 0.51
PTPRF-209ENST00000438120 RASSF3Q86WH2 238 aa18.27■□□□□ 0.51
PTPRF-209ENST00000438120 EXOC4Q96A65 974 aa18.27■□□□□ 0.51
PTPRF-209ENST00000438120 WDR19Q8NEZ3 1342 aa18.27■□□□□ 0.51
PTPRF-209ENST00000438120 ALX1Q15699 326 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 SP8Q8IXZ3 490 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 NEDD1Q8NHV4 660 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 SP110Q9HB58 689 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 IP6K2Q9UHH9 426 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 STAP1Q9ULZ2 295 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 DFFAO00273 331 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 ATG9AQ7Z3C6 839 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 PCDHA10Q9Y5I2 948 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 TADA3O75528 432 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 ESRRGP62508 458 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 HSP90AA5PQ58FG0 334 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 TRIM59Q8IWR1 403 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 ZBTB18Q99592 522 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 APOBEC2Q9Y235 224 aaKnown RBP18.26■□□□□ 0.51
PTPRF-209ENST00000438120 BCAR1P56945 870 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 NSUN4Q96CB9 384 aaKnown RBP18.26■□□□□ 0.51
PTPRF-209ENST00000438120 KRT14P02533 472 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 ADRA2BP18089 450 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 PRAMEF18Q5VWM3 479 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 AGR3Q8TD06 166 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 TMEM143Q96AN5 459 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 ADAM33Q9BZ11 813 aa18.26■□□□□ 0.51
PTPRF-209ENST00000438120 E5RI56 91 aa18.25■□□□□ 0.51
PTPRF-209ENST00000438120 CTIFO43310 598 aaKnown RBP18.25■□□□□ 0.51
PTPRF-209ENST00000438120 TXNP10599 105 aaKnown RBP18.25■□□□□ 0.51
PTPRF-209ENST00000438120 NT5C2P49902 561 aa18.25■□□□□ 0.51
PTPRF-209ENST00000438120 ROR1Q01973 937 aa18.25■□□□□ 0.51
PTPRF-209ENST00000438120 GLE1Q53GS7 698 aaKnown RBP18.25■□□□□ 0.51
PTPRF-209ENST00000438120 C12orf60Q5U649 245 aa18.25■□□□□ 0.51
PTPRF-209ENST00000438120 UPF3AQ9H1J1 476 aaKnown RBP18.25■□□□□ 0.51
PTPRF-209ENST00000438120 SPAG7O75391 227 aa18.25■□□□□ 0.51
PTPRF-209ENST00000438120 ANP32DO95626 131 aa18.25■□□□□ 0.51
PTPRF-209ENST00000438120 ATP2C1P98194 919 aaPredicted RBP18.25■□□□□ 0.51
PTPRF-209ENST00000438120 MTF1Q14872 753 aa18.25■□□□□ 0.51
PTPRF-209ENST00000438120 NAALADL2Q58DX5 795 aa18.25■□□□□ 0.51
PTPRF-209ENST00000438120 EFHC2Q5JST6 749 aa18.25■□□□□ 0.51
PTPRF-209ENST00000438120 DRC3Q9H069 523 aa18.25■□□□□ 0.51
PTPRF-209ENST00000438120 HECW2Q9P2P5 1572 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms