RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 EDRF1Q3B7T1 1238 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 ZC2HC1CQ53FD0 456 aaPredicted RBP12.38□□□□□ -0.43
LINC00539-203ENST00000434601 ZNF484Q5JVG2 852 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 LRRC55Q6ZSA7 311 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 ZC3H3Q8IXZ2 948 aaKnown RBP12.38□□□□□ -0.43
LINC00539-203ENST00000434601 ATXN2LQ8WWM7 1075 aaKnown RBP12.38□□□□□ -0.43
LINC00539-203ENST00000434601 BSNDQ8WZ55 320 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 HVCN1Q96D96 273 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 IFT74Q96LB3 600 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 NOC4LQ9BVI4 516 aaKnown RBP12.38□□□□□ -0.43
LINC00539-203ENST00000434601 STRA6Q9BX79 667 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 XPO4Q9C0E2 1151 aaKnown RBP12.38□□□□□ -0.43
LINC00539-203ENST00000434601 KMT5AQ9NQR1 393 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 TYW1Q9NV66 732 aaKnown RBP12.38□□□□□ -0.43
LINC00539-203ENST00000434601 MAGEC2Q9UBF1 373 aaPredicted RBP12.38□□□□□ -0.43
LINC00539-203ENST00000434601 SCN10AQ9Y5Y9 1956 aa12.38□□□□□ -0.43
LINC00539-203ENST00000434601 CCDC169A6NNP5 214 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 H0YCG3 227 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 H3BRB1 525 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 PDXKO00764 312 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 SLC16A4O15374 487 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 B4GALT4O60513 344 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 KPNA6O60684 536 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 F2P00734 622 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 TPM3P06753 285 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 PBX2P40425 430 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 CCL23P55773 120 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 UBASH3AP57075 661 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 GTF2BQ00403 316 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 FKBP3Q00688 224 aaKnown RBP12.37□□□□□ -0.43
LINC00539-203ENST00000434601 PPP2R5AQ15172 486 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 KRT31Q15323 416 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 TCP11X2Q5H9J9 407 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 APTXQ7Z2E3 356 aaKnown RBP12.37□□□□□ -0.43
LINC00539-203ENST00000434601 HAUS6Q7Z4H7 955 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 IRF2BP1Q8IU81 584 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 ASAP3Q8TDY4 903 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 TCP11Q8WWU5 503 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 TMEM143Q96AN5 459 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 CNOT6LQ96LI5 555 aaKnown RBP12.37□□□□□ -0.43
LINC00539-203ENST00000434601 CEP63Q96MT8 703 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 CTAGE1Q96RT6 745 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 KIFC3Q9BVG8 833 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 RNPEPQ9H4A4 650 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 PRDM12Q9H4Q4 367 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 TUT1Q9H6E5 874 aaKnown RBP12.37□□□□□ -0.43
LINC00539-203ENST00000434601 TMEM206Q9H813 350 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 PRDM6Q9NQX0 595 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 LIMA1Q9UHB6 759 aaKnown RBP12.37□□□□□ -0.43
LINC00539-203ENST00000434601 KCNG1Q9UIX4 513 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 TRAF3IP3Q9Y228 551 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 SLC4A7Q9Y6M7 1214 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 TRIP12Q14669 1992 aaPredicted RBP12.37□□□□□ -0.43
LINC00539-203ENST00000434601 GRIN2DO15399 1336 aa12.37□□□□□ -0.43
LINC00539-203ENST00000434601 IGKV6-21A0A0C4DH24 114 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 A0A1B0GTH6 734 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 TGFB1I1O43294 461 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 C22orf31O95567 290 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 INSRRP14616 1297 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 GLRA2P23416 452 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 ABCD1P33897 745 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 NAMPTP43490 491 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 COPB1P53618 953 aaKnown RBP12.36□□□□□ -0.43
LINC00539-203ENST00000434601 KCNA1Q09470 495 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 PPFIA1Q13136 1202 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 NFIL3Q16649 462 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 FILIP1LQ4L180 1135 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 IER5Q5VY09 327 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 HS2ST1Q7LGA3 356 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 OTOP2Q7RTS6 562 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 KSR1Q8IVT5 923 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 SYCP3Q8IZU3 236 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 USP38Q8NB14 1042 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 TMEM161BQ8NDZ6 487 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 GOLGA5Q8TBA6 731 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 TRAPPC12Q8WVT3 735 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 KCNN1Q92952 543 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 ACCSQ96QU6 501 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 NTPCRQ9BSD7 190 aaKnown RBP12.36□□□□□ -0.43
LINC00539-203ENST00000434601 GBP3Q9H0R5 595 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 TRPV6Q9H1D0 765 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 TSPYL2Q9H2G4 693 aaPredicted RBP12.36□□□□□ -0.43
LINC00539-203ENST00000434601 CXXC1Q9P0U4 656 aaPredicted RBP12.36□□□□□ -0.43
LINC00539-203ENST00000434601 ARHGAP28Q9P2N2 729 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 THEGQ9P2T0 379 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 ADGRA3Q8IWK6 1321 aa12.36□□□□□ -0.43
LINC00539-203ENST00000434601 SCN5AQ14524 2016 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 BDP1A6H8Y1 2624 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 DENND3A2RUS2 1198 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 TNFRSF10AO00220 468 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 MAGEB2O15479 319 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 GNA14O95837 355 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 NR3C1P04150 777 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 MYL3P08590 195 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 ACTN1P12814 892 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 SCP2P22307 547 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 IGFBP4P22692 258 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 NR2F2P24468 414 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 RFC2P35250 354 aa12.35□□□□□ -0.43
LINC00539-203ENST00000434601 IGBP1P78318 339 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms