RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 CAPRIN1Q14444 709 aaKnown RBP12.1□□□□□ -0.47
TTC28-201ENST00000397906 LBRQ14739 615 aaKnown RBP12.1□□□□□ -0.47
TTC28-201ENST00000397906 CCHCR1Q8TD31 782 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 TEX13BQ9BXU2 312 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 CALB1P05937 261 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 KITP10721 976 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 TAF1BQ53T94 588 aaPredicted RBP12.1□□□□□ -0.47
TTC28-201ENST00000397906 BHMTQ93088 406 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 VPS39Q96JC1 886 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 KRT82Q9NSB4 513 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 CETPP11597 493 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 PHEXP78562 749 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 DONSONQ9NYP3 566 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 WDR72Q3MJ13 1102 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 PBKQ96KB5 322 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 BCL2L12Q9HB09 334 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 OR1G1P47890 313 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 ZNF513Q8N8E2 541 aaPredicted RBP12.1□□□□□ -0.47
TTC28-201ENST00000397906 THOC1Q96FV9 657 aaKnown RBP12.1□□□□□ -0.47
TTC28-201ENST00000397906 CRAMP1Q96RY5 1269 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 TTI1O43156 1089 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 SAYSD1Q9NPB0 183 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 CYBBP04839 570 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 TAC1P20366 129 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 ANKRD40Q6AI12 368 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 INTS2Q9H0H0 1204 aaKnown RBP12.1□□□□□ -0.47
TTC28-201ENST00000397906 INTUQ9ULD6 942 aa12.1□□□□□ -0.47
TTC28-201ENST00000397906 SERPIND1P05546 499 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 TBXAS1P24557 533 aaPredicted RBP12.09□□□□□ -0.47
TTC28-201ENST00000397906 ACOT2P49753 483 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 HSPA4LO95757 839 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 RBBP7Q16576 425 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 PHLPP2Q6ZVD8 1323 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 EMSYQ7Z589 1322 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 FMO2Q99518 471 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 HEATR6Q6AI08 1181 aaKnown RBP12.09□□□□□ -0.47
TTC28-201ENST00000397906 KCNV1Q6PIU1 500 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 TRMT10CQ7L0Y3 403 aaKnown RBP12.09□□□□□ -0.47
TTC28-201ENST00000397906 SFMBT1Q9UHJ3 866 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 PAPOLAP51003 745 aaKnown RBP12.09□□□□□ -0.47
TTC28-201ENST00000397906 GNASQ5JWF2 1037 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 ZNF560Q96MR9 790 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 IQGAP3Q86VI3 1631 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 UBE2Q2LH0YL09 131 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 GH1P01241 217 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 VCPP55072 806 aaKnown RBP12.09□□□□□ -0.47
TTC28-201ENST00000397906 ZNF235Q14590 738 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 DEFB129Q9H1M3 183 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 PDGFRBP09619 1106 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 GPRC5AQ8NFJ5 357 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 MUC3BQ9H195 1237 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 GTSE1Q9NYZ3 720 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 AGAP1Q9UPQ3 857 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 NUDT18Q6ZVK8 323 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 CEP72Q9P209 647 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 CDC23Q9UJX2 597 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 RCOR1Q9UKL0 485 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 TRAPPC3O43617 180 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 SYF2O95926 243 aaKnown RBP12.09□□□□□ -0.47
TTC28-201ENST00000397906 CDC25BP30305 580 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 ZNF211Q13398 564 aaPredicted RBP12.09□□□□□ -0.47
TTC28-201ENST00000397906 EPHB4P54760 987 aa12.09□□□□□ -0.47
TTC28-201ENST00000397906 FAM133BQ5BKY9 247 aaKnown RBP12.09□□□□□ -0.47
TTC28-201ENST00000397906 ZNF564Q8TBZ8 553 aaPredicted RBP12.09□□□□□ -0.47
TTC28-201ENST00000397906 IQANK1A0A1B0GTG1 560 aa12.08□□□□□ -0.47
TTC28-201ENST00000397906 HDLBPQ00341 1268 aaKnown RBP12.08□□□□□ -0.47
TTC28-201ENST00000397906 PHLDB3Q6NSJ2 640 aa12.08□□□□□ -0.47
TTC28-201ENST00000397906 GOLPH3LQ9H4A5 285 aa12.08□□□□□ -0.47
TTC28-201ENST00000397906 DOLKQ9UPQ8 538 aa12.08□□□□□ -0.47
TTC28-201ENST00000397906 SNX9Q9Y5X1 595 aa12.08□□□□□ -0.47
TTC28-201ENST00000397906 ALDH1A1P00352 501 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 HSPA6P17066 643 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 ATN1P54259 1190 aaPredicted RBP12.08□□□□□ -0.48
TTC28-201ENST00000397906 IER5Q5VY09 327 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 RHOT2Q8IXI1 618 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 ART3Q13508 389 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 ZNF512Q96ME7 567 aaPredicted RBP12.08□□□□□ -0.48
TTC28-201ENST00000397906 NUMBP49757 651 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 HAUS6Q7Z4H7 955 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 VSTM4Q8IW00 320 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 LRRC71Q8N4P6 559 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 TDRD7Q8NHU6 1098 aaKnown RBP12.08□□□□□ -0.48
TTC28-201ENST00000397906 RAPGEF5Q92565 580 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 ST8SIA6P61647 398 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 KLHL11Q9NVR0 708 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 CA4P22748 312 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 DUOXA2Q1HG44 320 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 PAN2Q504Q3 1202 aaKnown RBP12.08□□□□□ -0.48
TTC28-201ENST00000397906 C9orf131Q5VYM1 1079 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 MB21D2Q8IYB1 491 aaPredicted RBP12.08□□□□□ -0.48
TTC28-201ENST00000397906 TMEM247A6NEH6 219 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 GUCY1A2P33402 732 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 LCA5Q86VQ0 697 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 MGEA5O60502 916 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 ZRANB2O95218 330 aaKnown RBP eCLIP12.08□□□□□ -0.48
TTC28-201ENST00000397906 ANP32DO95626 131 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 ITPK1Q13572 414 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 TBCCQ15814 346 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 C12orf60Q5U649 245 aa12.08□□□□□ -0.48
TTC28-201ENST00000397906 ENOX1Q8TC92 643 aaKnown RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms