RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 WDFY3Q8IZQ1 3526 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 CNOT1A5YKK6 2376 aaKnown RBP10.66□□□□□ -0.7
NEDD9-203ENST00000397378 A0A0U1RQF3 1178 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 TMEM8BA6NDV4 472 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 SH2B2O14492 632 aaPredicted RBP10.66□□□□□ -0.7
NEDD9-203ENST00000397378 C2CD2LO14523 706 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 MAGEB2O15479 319 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 DHX15O43143 795 aaKnown RBP10.66□□□□□ -0.7
NEDD9-203ENST00000397378 SGSM2O43147 1006 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 PRC1O43663 620 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 GSPT1P15170 499 aaKnown RBP10.66□□□□□ -0.7
NEDD9-203ENST00000397378 RXRAP19793 462 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 EIF4BP23588 611 aaKnown RBP10.66□□□□□ -0.7
NEDD9-203ENST00000397378 TARSP26639 723 aaKnown RBP10.66□□□□□ -0.7
NEDD9-203ENST00000397378 MCM5P33992 734 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 RBM25P49756 843 aaKnown RBP10.66□□□□□ -0.7
NEDD9-203ENST00000397378 LIMK1P53667 647 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 NLRP11P59045 1033 aaKnown RBP10.66□□□□□ -0.7
NEDD9-203ENST00000397378 FOXC1Q12948 553 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 MTAPQ13126 283 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 AP3B2Q13367 1082 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 TTC22Q5TAA0 569 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 SWSAP1Q6NVH7 229 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 PPP1R18Q6NYC8 613 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 RSPO2Q6UXX9 243 aaPredicted RBP10.66□□□□□ -0.7
NEDD9-203ENST00000397378 TPRG1Q6ZUI0 275 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 ZNF598Q86UK7 904 aaKnown RBP10.66□□□□□ -0.7
NEDD9-203ENST00000397378 METTL13Q8N6R0 699 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 LINC01465Q8N7H1 131 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 FANCBQ8NB91 859 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 NELL2Q99435 816 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 GBP3Q9H0R5 595 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 ADAMTS10Q9H324 1103 aa10.66□□□□□ -0.7
NEDD9-203ENST00000397378 MRPL17Q9NRX2 175 aaKnown RBP10.66□□□□□ -0.7
NEDD9-203ENST00000397378 FAM217BQ9NTX9 383 aaPredicted RBP10.66□□□□□ -0.7
NEDD9-203ENST00000397378 DDX39AO00148 427 aaKnown RBP10.65□□□□□ -0.7
NEDD9-203ENST00000397378 KCNK5O95279 499 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 GLUD1P00367 558 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 ADH1AP07327 375 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 GALTP07902 379 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 SPINK2P20155 84 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 TMOD1P28289 359 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 ZNF76P36508 570 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 RPS9P46781 194 aaKnown RBP10.65□□□□□ -0.7
NEDD9-203ENST00000397378 CLK2P49760 499 aaKnown RBP10.65□□□□□ -0.7
NEDD9-203ENST00000397378 CLCN3P51790 818 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 AK2P54819 239 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 PFKPQ01813 784 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 RNASELQ05823 741 aaKnown RBP10.65□□□□□ -0.7
NEDD9-203ENST00000397378 WWC2Q6AWC2 1192 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 PSAPL1Q6NUJ1 521 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 TYW1BQ6NUM6 668 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 ZNF746Q6NUN9 644 aaPredicted RBP10.65□□□□□ -0.7
NEDD9-203ENST00000397378 PARM1Q6UWI2 310 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 SGMS1Q86VZ5 419 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 CKAP2LQ8IYA6 745 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 CCDC82Q8N4S0 544 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 ZCCHC14Q8WYQ9 949 aaKnown RBP10.65□□□□□ -0.7
NEDD9-203ENST00000397378 CLDN23Q96B33 292 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 PGBD1Q96JS3 809 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 MAP7D2Q96T17 732 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 VN1R3Q9BXE9 311 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 RHOBTB2Q9BYZ6 727 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 ADAM33Q9BZ11 813 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 GLT8D2Q9H1C3 349 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 NRDE2Q9H7Z3 1164 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 DACT1Q9NYF0 836 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 INPP5FQ9Y2H2 1132 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 RBM8AQ9Y5S9 174 aaKnown RBP10.65□□□□□ -0.7
NEDD9-203ENST00000397378 SLC12A7Q9Y666 1083 aa10.65□□□□□ -0.7
NEDD9-203ENST00000397378 CNTNAP5Q8WYK1 1306 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 CEP295Q9C0D2 2601 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 IGLV3-22A0A075B6J6 115 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 FAM86B1E9PN63 330 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 hCG_1984214I3L0E3 225 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 TAF4O00268 1085 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 IPO5O00410 1097 aaKnown RBP10.64□□□□□ -0.71
NEDD9-203ENST00000397378 TM4SF5O14894 197 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 URODP06132 367 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 CYP3A4P08684 503 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 FAM86B2P0C5J1 330 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 SPATA31D3P0C874 917 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 ADCY7P51828 1080 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 NAPAP54920 295 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 SF3A2Q15428 464 aaKnown RBP10.64□□□□□ -0.71
NEDD9-203ENST00000397378 LONRF3Q496Y0 759 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 EFCAB12Q6NXP0 572 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 SPATA31D4Q6ZUB0 917 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 MTSS1LQ765P7 747 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 PLA2G4DQ86XP0 818 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 SMAP1Q8IYB5 467 aaPredicted RBP10.64□□□□□ -0.71
NEDD9-203ENST00000397378 ZNF713Q8N859 430 aaPredicted RBP10.64□□□□□ -0.71
NEDD9-203ENST00000397378 CRYGNQ8WXF5 182 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 ZNF707Q96C28 371 aaPredicted RBP10.64□□□□□ -0.71
NEDD9-203ENST00000397378 KIF12Q96FN5 646 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 FAM167AQ96KS9 214 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 TRAIPQ9BWF2 469 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 TBC1D22BQ9NU19 505 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 TBC1D13Q9NVG8 400 aa10.64□□□□□ -0.71
NEDD9-203ENST00000397378 DNAJB4Q9UDY4 337 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms