RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 KCNK16Q96T55 309 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 PEG3Q9GZU2 1588 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 GGPS1O95749 300 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 GYS1P13807 737 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 ICA1Q05084 483 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 HORMAD1Q86X24 394 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 PROM2Q8N271 834 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 ZNF507Q8TCN5 953 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 ACAP3Q96P50 834 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 TRIM51Q9BSJ1 452 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 COPRSQ9NQ92 184 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 TRIM10Q9UDY6 481 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 SYNDIG1LA6NDD5 238 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 NEMP1O14524 444 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 TARSP26639 723 aaKnown RBP12.56□□□□□ -0.4
SYNPO-202ENST00000394243 ZNF746Q6NUN9 644 aaPredicted RBP12.56□□□□□ -0.4
SYNPO-202ENST00000394243 CLEC17AQ6ZS10 378 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 PUS3Q9BZE2 481 aaKnown RBP12.56□□□□□ -0.4
SYNPO-202ENST00000394243 ZFATQ9P243 1243 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 INO80B-WBP1J3KQ70 363 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 PLOD1Q02809 727 aaPredicted RBP12.56□□□□□ -0.4
SYNPO-202ENST00000394243 PRKG1Q13976 671 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 KIAA1755Q5JYT7 1200 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 TLK2Q86UE8 772 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 SIX6OS1Q8N1H7 587 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 INO80BQ9C086 356 aaPredicted RBP12.56□□□□□ -0.4
SYNPO-202ENST00000394243 PUS7LQ9H0K6 701 aaKnown RBP12.56□□□□□ -0.4
SYNPO-202ENST00000394243 TCN1P20061 433 aaPredicted RBP12.56□□□□□ -0.4
SYNPO-202ENST00000394243 BTDP43251 543 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 CLK1P49759 484 aaKnown RBP12.56□□□□□ -0.4
SYNPO-202ENST00000394243 RAB14P61106 215 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 OSTNP61366 133 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 C4orf33Q8N1A6 199 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 KDM5AP29375 1690 aaKnown RBP12.55□□□□□ -0.4
SYNPO-202ENST00000394243 MAFGO15525 162 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 ADD2P35612 726 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 ARSEP51690 589 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 TMC4Q7Z404 712 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 NUP93Q8N1F7 819 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 OSBP2Q969R2 916 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 CEP170P1Q96L14 293 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 GCOM2Q9BZD3 368 aaPredicted RBP12.55□□□□□ -0.4
SYNPO-202ENST00000394243 BLOC1S6Q9UL45 172 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 FAM47DPA6NHR8 397 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 AIM2O14862 343 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 NQO1P15559 274 aaKnown RBP12.55□□□□□ -0.4
SYNPO-202ENST00000394243 SLC16A2P36021 539 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 UBE2SQ16763 222 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 SFR1Q86XK3 245 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 RHPN2Q8IUC4 686 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 NMD3Q96D46 503 aaKnown RBP12.55□□□□□ -0.4
SYNPO-202ENST00000394243 ATXN7L3BQ96GX2 97 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 ZFYVE19Q96K21 471 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 WDR11Q9BZH6 1224 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 VCPKMTQ9H867 229 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 XPAP23025 273 aaPredicted RBP12.55□□□□□ -0.4
SYNPO-202ENST00000394243 PAX7P23759 505 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 HDDC2Q7Z4H3 204 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 LZICQ8WZA0 190 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 TUBGCP3Q96CW5 907 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 SUGT1Q9Y2Z0 365 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 PRKAB2O43741 272 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 KCNJ6P48051 423 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 TFDP1Q14186 410 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 HIF1AQ16665 826 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 ZNF394Q53GI3 561 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 FASTKD1Q53R41 847 aaKnown RBP12.55□□□□□ -0.4
SYNPO-202ENST00000394243 POTEAQ6S8J7 498 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 DIABLOQ9NR28 239 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 TMEM120BA0PK00 339 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 SCTRP47872 440 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 CPA2P48052 419 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 TMC5Q6UXY8 1006 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 RASGRP2Q7LDG7 609 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 PATL1Q86TB9 770 aaKnown RBP12.55□□□□□ -0.4
SYNPO-202ENST00000394243 DNAJC10Q8IXB1 793 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 MDM1Q8TC05 714 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 NSL1Q96IY1 281 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 CLMNQ96JQ2 1002 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 UNC45AQ9H3U1 944 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 C20orf96Q9NUD7 363 aaPredicted RBP12.55□□□□□ -0.4
SYNPO-202ENST00000394243 SMARCAL1Q9NZC9 954 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 FANCAO15360 1455 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 DNMBPQ6XZF7 1577 aa12.55□□□□□ -0.4
SYNPO-202ENST00000394243 ZNF233A6NK53 670 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 TFDP2Q14188 446 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 FAM160B1Q5W0V3 765 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 C16orf89Q6UX73 402 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 SLC7A3Q8WY07 619 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 PAGR1Q9BTK6 254 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 MRPL1Q9BYD6 325 aaKnown RBP12.54□□□□□ -0.4
SYNPO-202ENST00000394243 RBM12Q9NTZ6 932 aaKnown RBP12.54□□□□□ -0.4
SYNPO-202ENST00000394243 PDHBP11177 359 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 TPP2P29144 1249 aaPredicted RBP12.54□□□□□ -0.4
SYNPO-202ENST00000394243 TBCCQ15814 346 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 KYNUQ16719 465 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 RWDD4Q6NW29 188 aaKnown RBP12.54□□□□□ -0.4
SYNPO-202ENST00000394243 PRPF39Q86UA1 669 aaKnown RBP12.54□□□□□ -0.4
SYNPO-202ENST00000394243 UBE4BO95155 1302 aa12.54□□□□□ -0.4
SYNPO-202ENST00000394243 DYNLL1P63167 89 aaKnown RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms