RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 SAPCD2Q86UD0 394 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 C2orf69Q8N8R5 385 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 TBCKQ8TEA7 893 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 CLEC4DQ8WXI8 215 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 GJA10Q969M2 543 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 PTPN18Q99952 460 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 TRIM9Q9C026 710 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 TXNRD2Q9NNW7 524 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 LUC7LQ9NQ29 371 aaKnown RBP12.04□□□□□ -0.48
CUX1-204ENST00000393824 BTBD7Q9P203 1132 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 DCDC2CA8MYV0 355 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 CXCL11O14625 94 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 NKRFO15226 690 aaKnown RBP eCLIP12.04□□□□□ -0.486e-7■■■□□ 16.5
CUX1-204ENST00000393824 SNUPNO95149 360 aaKnown RBP12.04□□□□□ -0.48
CUX1-204ENST00000393824 CCNG1P51959 295 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 BLMHQ13867 455 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 SPDYCQ5MJ68 293 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 BRI3BPQ8WY22 251 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 SYN2Q92777 582 aaPredicted RBP12.04□□□□□ -0.48
CUX1-204ENST00000393824 EEF2KMTQ96G04 330 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 ZIC5Q96T25 663 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 ASCC2Q9H1I8 757 aaPredicted RBP12.04□□□□□ -0.48
CUX1-204ENST00000393824 TMEM60Q9H2L4 133 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 FAM207AQ9NSI2 230 aaPredicted RBP12.04□□□□□ -0.48
CUX1-204ENST00000393824 PANK4Q9NVE7 773 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 FBXL5Q9UKA1 691 aa12.04□□□□□ -0.48
CUX1-204ENST00000393824 A6NHS1 94 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 hCG_1984214I3L0E3 225 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 CFBP00751 764 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 FESP07332 822 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 ALAS1P13196 640 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 GNA11P29992 359 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 EIF3BP55884 814 aaKnown RBP12.03□□□□□ -0.48
CUX1-204ENST00000393824 UBXN2AP68543 259 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 MAN2A1Q16706 1144 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 PDXDC1Q6P996 788 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 CACNA2D4Q7Z3S7 1137 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 CABP7Q86V35 215 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 KLHL7Q8IXQ5 586 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 ZNF713Q8N859 430 aaPredicted RBP12.03□□□□□ -0.48
CUX1-204ENST00000393824 COL11A1P12107 1806 aaPredicted RBP12.03□□□□□ -0.48
CUX1-204ENST00000393824 SART1O43290 800 aaKnown RBP12.03□□□□□ -0.48
CUX1-204ENST00000393824 COQ9O75208 318 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 TDP2O95551 362 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 FTCDO95954 541 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 PEX19P40855 299 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 STK4Q13043 487 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 LETM2Q2VYF4 491 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 PPP1R18Q6NYC8 613 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 TRPM8Q7Z2W7 1104 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 TBC1D1Q86TI0 1168 aaPredicted RBP12.03□□□□□ -0.48
CUX1-204ENST00000393824 ACTRT1Q8TDG2 376 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 UBLCP1Q8WVY7 318 aaPredicted RBP12.03□□□□□ -0.48
CUX1-204ENST00000393824 SEC14L1Q92503 715 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 ANKRD27Q96NW4 1050 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 NEUROG2Q9H2A3 272 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 MMRN2Q9H8L6 949 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 AGTPBP1Q9UPW5 1226 aa12.03□□□□□ -0.48
CUX1-204ENST00000393824 LOC285556D6RIA3 1793 aa12.02□□□□□ -0.48
CUX1-204ENST00000393824 PVALEFA0A1B0GWK0 134 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 SLC37A4O43826 429 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 AHCYL1O43865 530 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 KLRC1P26715 233 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 FKBP1BP68106 108 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 EHHADHQ08426 723 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 SPRYD7Q5W111 196 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 SNRNP48Q6IEG0 339 aaKnown RBP12.02□□□□□ -0.49
CUX1-204ENST00000393824 TMC3Q7Z5M5 1100 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 PROCA1Q8NCQ7 364 aaPredicted RBP12.02□□□□□ -0.49
CUX1-204ENST00000393824 SPDYE1Q8NFV5 336 aaPredicted RBP12.02□□□□□ -0.49
CUX1-204ENST00000393824 CYP2W1Q8TAV3 490 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 PARD3BQ8TEW8 1205 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 PBKQ96KB5 322 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 CCDC134Q9H6E4 229 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 BTBD19C9JJ37 291 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 DIAPH2O60879 1101 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 CNMDO75829 334 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 LUC7L3O95232 432 aaKnown RBP12.02□□□□□ -0.49
CUX1-204ENST00000393824 NQO1P15559 274 aaKnown RBP12.02□□□□□ -0.49
CUX1-204ENST00000393824 PLCG1P19174 1290 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 LRRC63Q05C16 580 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 PLS1Q14651 629 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 Q3C1V9 767 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 KRT71Q3SY84 523 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 SLC9C1Q4G0N8 1177 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 SLC30A10Q6XR72 485 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 ZNF784Q8NCA9 323 aaPredicted RBP12.02□□□□□ -0.49
CUX1-204ENST00000393824 CRYGNQ8WXF5 182 aa12.02□□□□□ -0.49
CUX1-204ENST00000393824 MYH7BA7E2Y1 1941 aa12.01□□□□□ -0.49
CUX1-204ENST00000393824 F8VZ95 297 aa12.01□□□□□ -0.49
CUX1-204ENST00000393824 OR52Z1P0C646 297 aa12.01□□□□□ -0.49
CUX1-204ENST00000393824 FLT3P36888 993 aa12.01□□□□□ -0.49
CUX1-204ENST00000393824 ASIC1P78348 528 aa12.01□□□□□ -0.49
CUX1-204ENST00000393824 SNAPC2Q13487 334 aa12.01□□□□□ -0.49
CUX1-204ENST00000393824 NONOQ15233 471 aaKnown RBP eCLIP12.01□□□□□ -0.491e-6■■■□□ 18.5
CUX1-204ENST00000393824 IFI16Q16666 785 aaKnown RBP12.01□□□□□ -0.49
CUX1-204ENST00000393824 KIAA0753Q2KHM9 967 aa12.01□□□□□ -0.49
CUX1-204ENST00000393824 LBX2Q6XYB7 198 aa12.01□□□□□ -0.49
CUX1-204ENST00000393824 DDX42Q86XP3 938 aaKnown RBP eCLIP12.01□□□□□ -0.49
CUX1-204ENST00000393824 MDM1Q8TC05 714 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms