RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 DKC1O60832 514 aaKnown RBP eCLIP23.4■■□□□ 1.34
TRIM54-202ENST00000380075 H2AFZP0C0S5 128 aa23.4■■□□□ 1.34
TRIM54-202ENST00000380075 NSMFQ6X4W1 530 aa23.4■■□□□ 1.34
TRIM54-202ENST00000380075 H2AFVQ71UI9 128 aa23.4■■□□□ 1.34
TRIM54-202ENST00000380075 LMBR1Q8WVP7 490 aa23.4■■□□□ 1.34
TRIM54-202ENST00000380075 CFHR5Q9BXR6 569 aa23.4■■□□□ 1.34
TRIM54-202ENST00000380075 RBPJLQ9UBG7 517 aa23.4■■□□□ 1.34
TRIM54-202ENST00000380075 DNAJC12Q9UKB3 198 aa23.4■■□□□ 1.34
TRIM54-202ENST00000380075 ADAMTS5Q9UNA0 930 aa23.4■■□□□ 1.34
TRIM54-202ENST00000380075 NCKAP1LP55160 1127 aa23.39■■□□□ 1.33
TRIM54-202ENST00000380075 NPEPPSP55786 919 aa23.39■■□□□ 1.33
TRIM54-202ENST00000380075 CBWD6Q4V339 395 aa23.39■■□□□ 1.33
TRIM54-202ENST00000380075 CBWD3Q5JTY5 395 aa23.39■■□□□ 1.33
TRIM54-202ENST00000380075 CBWD5Q5RIA9 395 aa23.39■■□□□ 1.33
TRIM54-202ENST00000380075 LBX2Q6XYB7 198 aa23.39■■□□□ 1.33
TRIM54-202ENST00000380075 VSIG10LQ86VR7 867 aa23.39■■□□□ 1.33
TRIM54-202ENST00000380075 REPS2Q8NFH8 660 aa23.39■■□□□ 1.33
TRIM54-202ENST00000380075 SUGCTQ9HAC7 445 aa23.39■■□□□ 1.33
TRIM54-202ENST00000380075 PDE11AQ9HCR9 933 aa23.39■■□□□ 1.33
TRIM54-202ENST00000380075 MED4Q9NPJ6 270 aa23.39■■□□□ 1.33
TRIM54-202ENST00000380075 PARP14Q460N5 1801 aa23.39■■□□□ 1.33
TRIM54-202ENST00000380075 POLR3GO15318 223 aaPredicted RBP23.38■■□□□ 1.33
TRIM54-202ENST00000380075 EVI5O60447 810 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 CXCR5P32302 372 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 C17orf99Q6UX52 265 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 PAGR1Q9BTK6 254 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 ZMYND15Q9H091 742 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 EXOC7Q9UPT5 735 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 MYPNQ86TC9 1320 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 MYH10P35580 1976 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 ATP2A1O14983 1001 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 PMM2O15305 246 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 FTCDO95954 541 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 TNFRSF8P28908 595 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 MCCD1P59942 119 aaPredicted RBP23.38■■□□□ 1.33
TRIM54-202ENST00000380075 BAATQ14032 418 aaPredicted RBP23.38■■□□□ 1.33
TRIM54-202ENST00000380075 DRAP1Q14919 205 aaPredicted RBP23.38■■□□□ 1.33
TRIM54-202ENST00000380075 HSP90B2PQ58FF3 399 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 GJB7Q6PEY0 223 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 HAUS6Q7Z4H7 955 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 XXYLT1Q8NBI6 393 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 TAF4BQ92750 862 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 BTBD7Q9P203 1132 aa23.38■■□□□ 1.33
TRIM54-202ENST00000380075 H3BQF6 201 aa23.37■■□□□ 1.33
TRIM54-202ENST00000380075 DDX3XO00571 662 aaKnown RBP eCLIP23.37■■□□□ 1.33
TRIM54-202ENST00000380075 CNMDO75829 334 aa23.37■■□□□ 1.33
TRIM54-202ENST00000380075 TRIM49P0CI25 452 aa23.37■■□□□ 1.33
TRIM54-202ENST00000380075 TRIM49CP0CI26 452 aa23.37■■□□□ 1.33
TRIM54-202ENST00000380075 GCLCP48506 637 aaPredicted RBP23.37■■□□□ 1.33
TRIM54-202ENST00000380075 MAEAQ7L5Y9 396 aa23.37■■□□□ 1.33
TRIM54-202ENST00000380075 SLC30A5Q8TAD4 765 aa23.37■■□□□ 1.33
TRIM54-202ENST00000380075 PSMB7Q99436 277 aa23.37■■□□□ 1.33
TRIM54-202ENST00000380075 MOV10L1Q9BXT6 1211 aaKnown RBP23.37■■□□□ 1.33
TRIM54-202ENST00000380075 RLFQ13129 1914 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 BACH1O14867 736 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 ATP9AO75110 1047 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 STAM2O75886 525 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 CCNE2O96020 404 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 NR3C2P08235 984 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 AARSP49588 968 aaKnown RBP eCLIP23.36■■□□□ 1.33
TRIM54-202ENST00000380075 VAMP7P51809 220 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 RPS6KA1Q15418 735 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 UGCGQ16739 394 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 Q3C1V9 767 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 OTUD6AQ7L8S5 288 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 SYCE1Q8N0S2 351 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 FAM71BQ8TC56 605 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 NSUN6Q8TEA1 469 aaKnown RBP23.36■■□□□ 1.33
TRIM54-202ENST00000380075 CDHR1Q96JP9 859 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 PBKQ96KB5 322 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 INPP4AQ96PE3 977 aaPredicted RBP23.36■■□□□ 1.33
TRIM54-202ENST00000380075 LRRC1Q9BTT6 524 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 C17orf75Q9HAS0 396 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 PCDHA10Q9Y5I2 948 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 LRRIQ3A6PVS8 624 aaPredicted RBP23.36■■□□□ 1.33
TRIM54-202ENST00000380075 SMTNP53814 917 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 PLS1Q14651 629 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 TMEM132BQ14DG7 1078 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 XKR9Q5GH70 373 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 SNRNP48Q6IEG0 339 aaKnown RBP23.36■■□□□ 1.33
TRIM54-202ENST00000380075 LRRC57Q8N9N7 239 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 STIM2Q9P246 746 aa23.36■■□□□ 1.33
TRIM54-202ENST00000380075 A0A0U1RQG5 324 aaPredicted RBP23.35■■□□□ 1.33
TRIM54-202ENST00000380075 TNNT3P45378 269 aaPredicted RBP23.35■■□□□ 1.33
TRIM54-202ENST00000380075 NOP2P46087 812 aaKnown RBP23.35■■□□□ 1.33
TRIM54-202ENST00000380075 C8orf74Q6P047 294 aa23.35■■□□□ 1.33
TRIM54-202ENST00000380075 GTF3C2Q8WUA4 911 aaPredicted RBP23.35■■□□□ 1.33
TRIM54-202ENST00000380075 SYT11Q9BT88 431 aa23.35■■□□□ 1.33
TRIM54-202ENST00000380075 HSPBP1Q9NZL4 362 aa23.35■■□□□ 1.33
TRIM54-202ENST00000380075 USP20Q9Y2K6 914 aa23.35■■□□□ 1.33
TRIM54-202ENST00000380075 RIPK3Q9Y572 518 aa23.35■■□□□ 1.33
TRIM54-202ENST00000380075 NFASCO94856 1347 aa23.35■■□□□ 1.33
TRIM54-202ENST00000380075 TPCN2Q8NHX9 752 aa23.34■■□□□ 1.33
TRIM54-202ENST00000380075 LMO3Q8TAP4 145 aa23.34■■□□□ 1.33
TRIM54-202ENST00000380075 AENQ8WTP8 325 aaKnown RBP23.34■■□□□ 1.33
TRIM54-202ENST00000380075 KIFAP3Q92845 792 aa23.34■■□□□ 1.33
TRIM54-202ENST00000380075 ATP6V0A1Q93050 837 aa23.34■■□□□ 1.33
TRIM54-202ENST00000380075 GPR88Q9GZN0 384 aa23.34■■□□□ 1.33
TRIM54-202ENST00000380075 ZNF214Q9UL59 606 aaPredicted RBP23.34■■□□□ 1.33
TRIM54-202ENST00000380075 KIF4AO95239 1232 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms