RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ADH4P08319 380 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 NR4A1P22736 598 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 SCNN1BP51168 640 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 PPARAQ07869 468 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 MGAT5Q09328 741 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 SART3Q15020 963 aaKnown RBP3.21□□□□□ -1.9
VPS13A-206ENST00000376646 TERF2Q15554 542 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 BROXQ5VW32 411 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 CCDC62Q6P9F0 684 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 FKBP9P1Q75LS8 142 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 CXorf67Q86X51 503 aaPredicted RBP3.21□□□□□ -1.9
VPS13A-206ENST00000376646 KIF18BQ86Y91 864 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 LDLRAD3Q86YD5 345 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 UBR7Q8N806 425 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 OR5M3Q8NGP4 307 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 FEZ1Q99689 392 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 EPC1Q9H2F5 836 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 NRDE2Q9H7Z3 1164 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 EMC7Q9NPA0 242 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 AURKAIP1Q9NWT8 199 aaPredicted RBP3.21□□□□□ -1.9
VPS13A-206ENST00000376646 EVLQ9UI08 416 aaPredicted RBP3.21□□□□□ -1.9
VPS13A-206ENST00000376646 TMPRSS11EQ9UL52 423 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 A0A087X0B3 334 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 GSG1L2A8MUP6 293 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 KDM1AO60341 852 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 FSBPO95073 299 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 LPLP06858 475 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 MYCLP1P12525 358 aaPredicted RBP3.21□□□□□ -1.9
VPS13A-206ENST00000376646 CANXP27824 592 aaKnown RBP3.21□□□□□ -1.9
VPS13A-206ENST00000376646 FSTL1Q12841 308 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 PASD1Q8IV76 773 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 CDYL2Q8N8U2 506 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 MDGA1Q8NFP4 955 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 PPP1R14CQ8TAE6 165 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 ST8SIA2Q92186 375 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 MFSD3Q96ES6 412 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 MLST8Q9BVC4 326 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 OSBPL6Q9BZF3 934 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 ZNF768Q9H5H4 540 aaKnown RBP3.21□□□□□ -1.9
VPS13A-206ENST00000376646 SORCS3Q9UPU3 1222 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 GRXCR1A8MXD5 290 aa3.2□□□□□ -1.9
VPS13A-206ENST00000376646 HOXA3O43365 443 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-206ENST00000376646 PDE8AO60658 829 aa3.2□□□□□ -1.9
VPS13A-206ENST00000376646 SEC24DO94855 1032 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-206ENST00000376646 GNAT2P19087 354 aa3.2□□□□□ -1.9
VPS13A-206ENST00000376646 MAKP20794 623 aa3.2□□□□□ -1.9
VPS13A-206ENST00000376646 MANFP55145 182 aaKnown RBP3.2□□□□□ -1.9
VPS13A-206ENST00000376646 PDCD1Q15116 288 aa3.2□□□□□ -1.9
VPS13A-206ENST00000376646 DDB1Q16531 1140 aa3.2□□□□□ -1.9
VPS13A-206ENST00000376646 CT83Q5H943 113 aa3.2□□□□□ -1.9
VPS13A-206ENST00000376646 RABL3Q5HYI8 236 aa3.2□□□□□ -1.9
VPS13A-206ENST00000376646 KIAA0907Q7Z7F0 614 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-206ENST00000376646 VRK3Q8IV63 474 aa3.2□□□□□ -1.9
VPS13A-206ENST00000376646 CMIPQ8IY22 773 aa3.2□□□□□ -1.9
VPS13A-206ENST00000376646 RPUSD2Q8IZ73 545 aaKnown RBP3.2□□□□□ -1.9
VPS13A-206ENST00000376646 PPM1KQ8N3J5 372 aa3.2□□□□□ -1.9
VPS13A-206ENST00000376646 ZNF610Q8N9Z0 462 aa3.2□□□□□ -1.9
VPS13A-206ENST00000376646 CEP89Q96ST8 783 aa3.2□□□□□ -1.9
VPS13A-206ENST00000376646 CPPED1Q9BRF8 314 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-206ENST00000376646 LSM14BQ9BX40 385 aaKnown RBP3.2□□□□□ -1.9
VPS13A-206ENST00000376646 ENKD1Q9H0I2 346 aa3.2□□□□□ -1.9
VPS13A-206ENST00000376646 ZMYM3Q14202 1370 aa3.2□□□□□ -1.9
VPS13A-206ENST00000376646 A0A087X1B8 175 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 MFAP3LO75121 409 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 ZFP36P26651 326 aaKnown RBP3.19□□□□□ -1.9
VPS13A-206ENST00000376646 LSP1P33241 339 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 LSSP48449 732 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 FAM189BP81408 668 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 DPTQ07507 201 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 UBE3CQ15386 1083 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 PITRM1Q5JRX3 1037 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 UNC5BQ8IZJ1 945 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 ZNF276Q8N554 614 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 OR2W6PQ8NHA6 318 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 CPT1CQ8TCG5 803 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 AGAP2Q99490 1192 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 TTPALQ9BTX7 342 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 C11orf21Q9P2W6 132 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 TRPS1Q9UHF7 1281 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 PRSS50Q9UI38 385 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 NEMP1O14524 444 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 MTSS1O43312 755 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 PRAMEF4O60810 478 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 SCAF4O95104 1147 aaKnown RBP3.19□□□□□ -1.9
VPS13A-206ENST00000376646 PHC1P78364 1004 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 CSRP2Q16527 193 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 MAN2A1Q16706 1144 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 ANKS6Q68DC2 871 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 MFSD5Q6N075 450 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 PCSK4Q6UW60 755 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 ABHD15Q6UXT9 468 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 STRA8Q7Z7C7 330 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 MRGPREQ86SM8 312 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 SLC25A43Q8WUT9 341 aaPredicted RBP3.19□□□□□ -1.9
VPS13A-206ENST00000376646 SLC5A5Q92911 643 aa3.19□□□□□ -1.9
VPS13A-206ENST00000376646 TOPORSQ9NS56 1045 aaPredicted RBP3.19□□□□□ -1.9
VPS13A-206ENST00000376646 USP36Q9P275 1121 aaKnown RBP3.19□□□□□ -1.9
VPS13A-206ENST00000376646 A0A1W2PR48 441 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 SERINC4A6NH21 518 aa3.18□□□□□ -1.9
VPS13A-206ENST00000376646 TMEM127O75204 238 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms