RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 FAM26DQ5JW98 314 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 FAM26FQ5R3K3 315 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 UBXN11Q5T124 520 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 KLHL10Q6JEL2 608 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 TAF2Q6P1X5 1199 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.43□□□□□ -1.7
LIG4-201ENST00000356922 LRRC8DQ7L1W4 858 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 SPRED2Q7Z698 418 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 IRF2BP1Q8IU81 584 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 ELOA2Q8IYF1 753 aaPredicted RBP4.43□□□□□ -1.7
LIG4-201ENST00000356922 ADSSL1Q8N142 457 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 ZNF507Q8TCN5 953 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 DPF3Q92784 378 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 KIFAP3Q92845 792 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 SMARCE1Q969G3 411 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 ELMO3Q96BJ8 720 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 GSDMAQ96QA5 445 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 DUSP9Q99956 384 aaKnown RBP4.43□□□□□ -1.7
LIG4-201ENST00000356922 DNAJC25Q9H1X3 360 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 PCIF1Q9H4Z3 704 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 KCND2Q9NZV8 630 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 HCSTQ9UBK5 93 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 MYO7AQ13402 2215 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.43□□□□□ -1.7
LIG4-201ENST00000356922 K7ENM7 598 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 K7ERI5 159 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 MBD3O95983 291 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 TIMP1P01033 207 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 GNAT1P11488 350 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 IBSPP21815 317 aaPredicted RBP4.43□□□□□ -1.7
LIG4-201ENST00000356922 TMOD1P28289 359 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 TNFSF9P41273 254 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 NAMPTP43490 491 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 CRYBB1P53674 252 aaPredicted RBP4.43□□□□□ -1.7
LIG4-201ENST00000356922 PTPN11Q06124 597 aaPredicted RBP4.43□□□□□ -1.7
LIG4-201ENST00000356922 MXD4Q14582 209 aaPredicted RBP4.43□□□□□ -1.7
LIG4-201ENST00000356922 KCNB1Q14721 858 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 PTPN21Q16825 1174 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 C9orf50Q5SZB4 431 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 CCDC183Q5T5S1 534 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 FAM109BQ6ICB4 259 aaPredicted RBP4.43□□□□□ -1.7
LIG4-201ENST00000356922 CRELD2Q6UXH1 353 aaPredicted RBP4.43□□□□□ -1.7
LIG4-201ENST00000356922 CRIPAKQ8N1N5 446 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 KCTD17Q8N5Z5 321 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 PLEKHO2Q8TD55 490 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 SPIRE2Q8WWL2 714 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 DRC1Q96MC2 740 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 LARSQ9P2J5 1176 aaKnown RBP4.43□□□□□ -1.7
LIG4-201ENST00000356922 CACNG4Q9UBN1 327 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 USP25Q9UHP3 1055 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 GOLGA8IPA6NC78 632 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 GOLGA8JA6NMD2 632 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 KIAA0355O15063 1070 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 TBCAO75347 108 aaKnown RBP4.43□□□□□ -1.7
LIG4-201ENST00000356922 SELPP16109 830 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 ATF7P17544 494 aaPredicted RBP4.43□□□□□ -1.7
LIG4-201ENST00000356922 DNM2P50570 870 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 OSTNP61366 133 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 AMPD3Q01432 767 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 RBL2Q08999 1139 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 DMP1Q13316 513 aaPredicted RBP4.43□□□□□ -1.7
LIG4-201ENST00000356922 ZCWPW2Q504Y3 356 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 ZNF658Q5TYW1 1059 aaPredicted RBP4.43□□□□□ -1.7
LIG4-201ENST00000356922 OTOP2Q7RTS6 562 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 ZBTB33Q86T24 672 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 IFNLR1Q8IU57 520 aaPredicted RBP4.43□□□□□ -1.7
LIG4-201ENST00000356922 RDH13Q8NBN7 331 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 LPPQ93052 612 aa4.43□□□□□ -1.7
LIG4-201ENST00000356922 ACO2Q99798 780 aaKnown RBP4.43□□□□□ -1.7
LIG4-201ENST00000356922 A0A1B0GUA9 196 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 PITPNM1O00562 1244 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 B4GALT3O60512 393 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 PROZP22891 400 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 GATMP50440 423 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 TYRO3Q06418 890 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 SPAG1Q07617 926 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 NCAPHQ15003 741 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 PLEKHG4Q58EX7 1191 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 KANK3Q6NY19 840 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 CCDC65Q8IXS2 484 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 NME8Q8N427 588 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 SMG8Q8ND04 991 aaKnown RBP4.42□□□□□ -1.7
LIG4-201ENST00000356922 GSTCDQ8NEC7 633 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 DEPTORQ8TB45 409 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 SAAL1Q96ER3 474 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 MAP7D2Q96T17 732 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 POP1Q99575 1024 aaKnown RBP4.42□□□□□ -1.7
LIG4-201ENST00000356922 IFIH1Q9BYX4 1025 aaKnown RBP4.42□□□□□ -1.7
LIG4-201ENST00000356922 PDZD7Q9H5P4 517 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 MAGEF1Q9HAY2 307 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 ERVK-5Q9HDB9 667 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 EXOC1Q9NV70 894 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 PLAGL2Q9UPG8 496 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 TRPV2Q9Y5S1 764 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 WDFY4Q6ZS81 3184 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 DMDP11532 3685 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 WDR87Q6ZQQ6 2873 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 TRIP11Q15643 1979 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 H0YGN5 161 aa4.42□□□□□ -1.7
LIG4-201ENST00000356922 ACKR2O00590 384 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms