RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 MYH11P35749 1972 aa20.38■□□□□ 0.85
CLN3-202ENST00000355477 NT5C1B-RDH14C9J2C7 533 aa20.38■□□□□ 0.85
CLN3-202ENST00000355477 B4GALT5O43286 388 aa20.38■□□□□ 0.85
CLN3-202ENST00000355477 ARF4P18085 180 aaPredicted RBP20.38■□□□□ 0.85
CLN3-202ENST00000355477 AFF1P51825 1210 aaKnown RBP20.38■□□□□ 0.85
CLN3-202ENST00000355477 BCAR1P56945 870 aa20.38■□□□□ 0.85
CLN3-202ENST00000355477 ATP2C1P98194 919 aaPredicted RBP20.38■□□□□ 0.85
CLN3-202ENST00000355477 ADAM15Q13444 863 aa20.38■□□□□ 0.85
CLN3-202ENST00000355477 SLC39A11Q8N1S5 342 aa20.38■□□□□ 0.85
CLN3-202ENST00000355477 MICAL1Q8TDZ2 1067 aa20.38■□□□□ 0.85
CLN3-202ENST00000355477 MRPS27Q92552 414 aaKnown RBP20.38■□□□□ 0.85
CLN3-202ENST00000355477 PGBD4Q96DM1 585 aa20.38■□□□□ 0.85
CLN3-202ENST00000355477 MMTAG2Q9BU76 263 aaKnown RBP20.38■□□□□ 0.85
CLN3-202ENST00000355477 MRPL9Q9BYD2 267 aaKnown RBP20.38■□□□□ 0.85
CLN3-202ENST00000355477 RAB34Q9BZG1 259 aa20.38■□□□□ 0.85
CLN3-202ENST00000355477 BHMT2Q9H2M3 363 aa20.38■□□□□ 0.85
CLN3-202ENST00000355477 TBC1D13Q9NVG8 400 aa20.38■□□□□ 0.85
CLN3-202ENST00000355477 SPG21Q9NZD8 308 aa20.38■□□□□ 0.85
CLN3-202ENST00000355477 LZTS1Q9Y250 596 aa20.38■□□□□ 0.85
CLN3-202ENST00000355477 LRRIQ4A6NIV6 560 aa20.37■□□□□ 0.85
CLN3-202ENST00000355477 FSCN2O14926 492 aa20.37■□□□□ 0.85
CLN3-202ENST00000355477 AXLP30530 894 aa20.37■□□□□ 0.85
CLN3-202ENST00000355477 NRIP1P48552 1158 aa20.37■□□□□ 0.85
CLN3-202ENST00000355477 PTCRAQ6ISU1 281 aaPredicted RBP20.37■□□□□ 0.85
CLN3-202ENST00000355477 NOTUMQ6P988 496 aa20.37■□□□□ 0.85
CLN3-202ENST00000355477 RNF39Q9H2S5 420 aa20.37■□□□□ 0.85
CLN3-202ENST00000355477 NRDE2Q9H7Z3 1164 aa20.37■□□□□ 0.85
CLN3-202ENST00000355477 IPPQ9Y573 584 aa20.37■□□□□ 0.85
CLN3-202ENST00000355477 GRXCR2A6NFK2 248 aa20.36■□□□□ 0.85
CLN3-202ENST00000355477 E9PMD0 336 aa20.36■□□□□ 0.85
CLN3-202ENST00000355477 PER2O15055 1255 aa20.36■□□□□ 0.85
CLN3-202ENST00000355477 B4GALT3O60512 393 aa20.36■□□□□ 0.85
CLN3-202ENST00000355477 ZC3H11AO75152 810 aaKnown RBP eCLIP20.36■□□□□ 0.85
CLN3-202ENST00000355477 TBX10O75333 385 aa20.36■□□□□ 0.85
CLN3-202ENST00000355477 IL9P15248 144 aa20.36■□□□□ 0.85
CLN3-202ENST00000355477 NCLP19338 710 aaKnown RBP20.36■□□□□ 0.85
CLN3-202ENST00000355477 PPM1AP35813 382 aa20.36■□□□□ 0.85
CLN3-202ENST00000355477 CDCA2Q69YH5 1023 aaPredicted RBP20.36■□□□□ 0.85
CLN3-202ENST00000355477 KCNK18Q7Z418 384 aa20.36■□□□□ 0.85
CLN3-202ENST00000355477 TMEM173Q86WV6 379 aaPredicted RBP20.36■□□□□ 0.85
CLN3-202ENST00000355477 CDR2LQ86X02 465 aaPredicted RBP20.36■□□□□ 0.85
CLN3-202ENST00000355477 ZNF280BQ86YH2 543 aa20.36■□□□□ 0.85
CLN3-202ENST00000355477 EFHBQ8N7U6 833 aa20.36■□□□□ 0.85
CLN3-202ENST00000355477 CSRNP2Q9H175 543 aa20.36■□□□□ 0.85
CLN3-202ENST00000355477 TLE6Q9H808 572 aa20.36■□□□□ 0.85
CLN3-202ENST00000355477 RSAD1Q9HA92 442 aa20.36■□□□□ 0.85
CLN3-202ENST00000355477 DNAJB4Q9UDY4 337 aa20.36■□□□□ 0.85
CLN3-202ENST00000355477 PUF60Q9UHX1 559 aaKnown RBP20.36■□□□□ 0.85
CLN3-202ENST00000355477 HES2Q9Y543 173 aa20.36■□□□□ 0.85
CLN3-202ENST00000355477 STK24Q9Y6E0 443 aa20.36■□□□□ 0.85
CLN3-202ENST00000355477 TTLL13PA6NNM8 815 aa20.35■□□□□ 0.85
CLN3-202ENST00000355477 ALDH7A1P49419 539 aaKnown RBP20.35■□□□□ 0.85
CLN3-202ENST00000355477 KRT17Q04695 432 aa20.35■□□□□ 0.85
CLN3-202ENST00000355477 RNASELQ05823 741 aaKnown RBP20.35■□□□□ 0.85
CLN3-202ENST00000355477 NCBP1Q09161 790 aaKnown RBP20.35■□□□□ 0.85
CLN3-202ENST00000355477 CLUL1Q15846 466 aa20.35■□□□□ 0.85
CLN3-202ENST00000355477 PLPP4Q5VZY2 271 aa20.35■□□□□ 0.85
CLN3-202ENST00000355477 KRT79Q5XKE5 535 aa20.35■□□□□ 0.85
CLN3-202ENST00000355477 RSPH1Q8WYR4 309 aa20.35■□□□□ 0.85
CLN3-202ENST00000355477 PPP2R3CQ969Q6 453 aa20.35■□□□□ 0.85
CLN3-202ENST00000355477 CCDC51Q96ER9 411 aa20.35■□□□□ 0.85
CLN3-202ENST00000355477 TCF25Q9BQ70 676 aa20.35■□□□□ 0.85
CLN3-202ENST00000355477 GBP3Q9H0R5 595 aa20.35■□□□□ 0.85
CLN3-202ENST00000355477 FZD8Q9H461 694 aa20.35■□□□□ 0.85
CLN3-202ENST00000355477 CNTNAP2Q9UHC6 1331 aa20.34■□□□□ 0.85
CLN3-202ENST00000355477 TRIP11Q15643 1979 aa20.34■□□□□ 0.85
CLN3-202ENST00000355477 A0A1B0GUA9 196 aa20.34■□□□□ 0.85
CLN3-202ENST00000355477 VWA3AA6NCI4 1184 aa20.34■□□□□ 0.85
CLN3-202ENST00000355477 HIDE1A8MVS5 230 aa20.34■□□□□ 0.85
CLN3-202ENST00000355477 DDHD2O94830 711 aa20.34■□□□□ 0.85
CLN3-202ENST00000355477 EYA4O95677 639 aa20.34■□□□□ 0.85
CLN3-202ENST00000355477 GLP2RO95838 553 aa20.34■□□□□ 0.85
CLN3-202ENST00000355477 GALTP07902 379 aa20.34■□□□□ 0.85
CLN3-202ENST00000355477 ITGA4P13612 1032 aa20.34■□□□□ 0.85
CLN3-202ENST00000355477 RBM10P98175 930 aaKnown RBP20.34■□□□□ 0.85
CLN3-202ENST00000355477 PDE12Q6L8Q7 609 aaKnown RBP20.34■□□□□ 0.85
CLN3-202ENST00000355477 CNNM3Q8NE01 707 aa20.34■□□□□ 0.85
CLN3-202ENST00000355477 BCL7CQ8WUZ0 217 aaPredicted RBP20.34■□□□□ 0.85
CLN3-202ENST00000355477 CD320Q9NPF0 282 aa20.34■□□□□ 0.85
CLN3-202ENST00000355477 ENTPD7Q9NQZ7 604 aa20.34■□□□□ 0.85
CLN3-202ENST00000355477 CLEC1BQ9P126 229 aa20.34■□□□□ 0.85
CLN3-202ENST00000355477 DNM3Q9UQ16 869 aa20.34■□□□□ 0.85
CLN3-202ENST00000355477 USP20Q9Y2K6 914 aa20.34■□□□□ 0.85
CLN3-202ENST00000355477 POMCP01189 267 aa20.33■□□□□ 0.85
CLN3-202ENST00000355477 NAMPTP43490 491 aa20.33■□□□□ 0.85
CLN3-202ENST00000355477 SLC11A1P49279 550 aa20.33■□□□□ 0.85
CLN3-202ENST00000355477 PUS10Q3MIT2 529 aaKnown RBP20.33■□□□□ 0.85
CLN3-202ENST00000355477 ARL6IP4Q66PJ3 421 aaKnown RBP20.33■□□□□ 0.85
CLN3-202ENST00000355477 PPP4R3CPQ6ZMV5 832 aa20.33■□□□□ 0.85
CLN3-202ENST00000355477 FAM178BQ8IXR5 827 aa20.33■□□□□ 0.85
CLN3-202ENST00000355477 VN1R2Q8NFZ6 395 aa20.33■□□□□ 0.85
CLN3-202ENST00000355477 URGCPQ8TCY9 931 aa20.33■□□□□ 0.85
CLN3-202ENST00000355477 PNMA5Q96PV4 448 aa20.33■□□□□ 0.85
CLN3-202ENST00000355477 NXF3Q9H4D5 531 aaKnown RBP20.33■□□□□ 0.85
CLN3-202ENST00000355477 MIOSQ9NXC5 875 aa20.33■□□□□ 0.85
CLN3-202ENST00000355477 GTF3C3Q9Y5Q9 886 aa20.33■□□□□ 0.85
CLN3-202ENST00000355477 VPS37CA5D8V6 355 aaPredicted RBP20.32■□□□□ 0.84
CLN3-202ENST00000355477 ARL5CA6NH57 179 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 NPTXRO95502 500 aa20.32■□□□□ 0.84
CLN3-202ENST00000355477 EDN1P05305 212 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms