RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 GPR20Q99678 358 aa13.95□□□□□ -0.18
CLK3-201ENST00000345005 NUCKS1Q9H1E3 243 aaKnown RBP13.95□□□□□ -0.18
CLK3-201ENST00000345005 IKZF4Q9H2S9 585 aa13.95□□□□□ -0.18
CLK3-201ENST00000345005 DHX33Q9H6R0 707 aaKnown RBP13.95□□□□□ -0.18
CLK3-201ENST00000345005 VTA1Q9NP79 307 aa13.95□□□□□ -0.18
CLK3-201ENST00000345005 XPNPEP1Q9NQW7 623 aa13.95□□□□□ -0.18
CLK3-201ENST00000345005 CEP72Q9P209 647 aa13.95□□□□□ -0.18
CLK3-201ENST00000345005 TBX20Q9UMR3 447 aa13.95□□□□□ -0.18
CLK3-201ENST00000345005 MANSC4A6NHS7 340 aaPredicted RBP13.94□□□□□ -0.18
CLK3-201ENST00000345005 KRT86O43790 486 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 LGR5O75473 907 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 IPO7O95373 1038 aaKnown RBP13.94□□□□□ -0.18
CLK3-201ENST00000345005 AMPD2Q01433 879 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 PPP2R5AQ15172 486 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 DCAF17Q5H9S7 520 aaPredicted RBP13.94□□□□□ -0.18
CLK3-201ENST00000345005 TCERG1LQ5VWI1 586 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 WDR59Q6PJI9 974 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 PLPPR4Q7Z2D5 763 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 CACNA2D4Q7Z3S7 1137 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 GPR142Q7Z601 462 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 PLEKHH3Q7Z736 793 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 DPP9Q86TI2 863 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 CCDC155Q8N6L0 562 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 SLC7A3Q8WY07 619 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 CCDC102AQ96A19 550 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 SLC35C1Q96A29 364 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 CHP1Q99653 195 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 IRX2Q9BZI1 471 aaPredicted RBP13.94□□□□□ -0.18
CLK3-201ENST00000345005 POLR3FQ9H1D9 316 aaPredicted RBP13.94□□□□□ -0.18
CLK3-201ENST00000345005 PLAGL2Q9UPG8 496 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 DOCK3Q8IZD9 2030 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 ZNF236Q9UL36 1845 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 ANO9A1A5B4 782 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 DENND3A2RUS2 1198 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 GTPBP10A4D1E9 387 aaKnown RBP13.94□□□□□ -0.18
CLK3-201ENST00000345005 MAPK13O15264 365 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 NDUFA10O95299 355 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 CYLC1P35663 651 aaPredicted RBP13.94□□□□□ -0.18
CLK3-201ENST00000345005 ARHGAP25P42331 645 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 MAGEA9P43362 315 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 TARBP2Q15633 366 aaKnown RBP13.94□□□□□ -0.18
CLK3-201ENST00000345005 PAPD7Q5XG87 772 aaKnown RBP13.94□□□□□ -0.18
CLK3-201ENST00000345005 TRAPPC11Q7Z392 1133 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 RASAL3Q86YV0 1011 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 MAP4K3Q8IVH8 894 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 EXOC8Q8IYI6 725 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 CCDC170Q8IYT3 715 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 BSNDQ8WZ55 320 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 GLG1Q92896 1179 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 SPATA33Q96N06 139 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 CRACR2AQ9BSW2 395 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 LSM14BQ9BX40 385 aaKnown RBP13.94□□□□□ -0.18
CLK3-201ENST00000345005 TSGA10Q9BZW7 698 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 SAR1BQ9Y6B6 198 aa13.94□□□□□ -0.18
CLK3-201ENST00000345005 SIP14410 1827 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 EPHB6O15197 1021 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 NOL4O94818 638 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 RHOXF2BP0C7M4 288 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 KRT13P13646 458 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 SLC26A2P50443 739 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 SOX10P56693 466 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 VSNL1P62760 191 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 GRB14Q14449 540 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 EXOC3L4Q17RC7 722 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 MAMDC4Q6UXC1 1216 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 GBP6Q6ZN66 633 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 RRAGAQ7L523 313 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 XXYLT1Q8NBI6 393 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 SYN2Q92777 582 aaPredicted RBP13.93□□□□□ -0.18
CLK3-201ENST00000345005 CEP89Q96ST8 783 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 RHOXF2Q9BQY4 288 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 PLCB1Q9NQ66 1216 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 EMSYQ7Z589 1322 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 PCNTO95613 3336 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 KAT6AQ92794 2004 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 EVPLQ92817 2033 aa13.93□□□□□ -0.18
CLK3-201ENST00000345005 RBM47A0AV96 593 aaKnown RBP13.92□□□□□ -0.18
CLK3-201ENST00000345005 SLC15A5A6NIM6 579 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 ARL2P36404 184 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 ITIH3Q06033 890 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 LAMC2Q13753 1193 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 HSDL1Q3SXM5 330 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 TAPT1Q6NXT6 567 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 PDXDC1Q6P996 788 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 INTS8Q75QN2 995 aaKnown RBP13.92□□□□□ -0.18
CLK3-201ENST00000345005 PPM1EQ8WY54 764 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 BAP1Q92560 729 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 KCNN1Q92952 543 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 SMARCAD1Q9H4L7 1026 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 PDGFCQ9NRA1 345 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 SLC5A4Q9NY91 659 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 HSPBP1Q9NZL4 362 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 FAN1Q9Y2M0 1017 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 PPFIA4O75335 1185 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 MAFO75444 373 aaPredicted RBP13.92□□□□□ -0.18
CLK3-201ENST00000345005 CNGA1P29973 690 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 INHBEP58166 350 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 POLR2FP61218 127 aaKnown RBP13.92□□□□□ -0.18
CLK3-201ENST00000345005 BFSP1Q12934 665 aa13.92□□□□□ -0.18
CLK3-201ENST00000345005 BRDTQ58F21 947 aaPredicted RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms