RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 A6NJR5 290 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 ADCY3O60266 1144 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 CSDE1O75534 798 aaKnown RBP4.52□□□□□ -1.69
MCF2-201ENST00000338585 NOL4O94818 638 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 ALDH1A1P00352 501 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 AFPP02771 609 aaKnown RBP4.52□□□□□ -1.69
MCF2-201ENST00000338585 HOXD8P13378 290 aaPredicted RBP4.52□□□□□ -1.69
MCF2-201ENST00000338585 SLC9A1P19634 815 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 CLCN1P35523 988 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 VEGFBP49765 207 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 TRIM14Q14142 442 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 DGKDQ16760 1214 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 CBWD6Q4V339 395 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 CBWD3Q5JTY5 395 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 CBWD5Q5RIA9 395 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 IER5Q5VY09 327 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 DPY19L2P1Q6NXN4 242 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 EFCAB12Q6NXP0 572 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 RAD9BQ6WBX8 426 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 TOGARAM2Q6ZUX3 1019 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 RHPN2Q8IUC4 686 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 CNGA4Q8IV77 575 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 C12orf56Q8IXR9 622 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 XXYLT1Q8NBI6 393 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 RNF149Q8NC42 400 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 SLC17A8Q8NDX2 589 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 PSPC1Q8WXF1 523 aaKnown RBP4.52□□□□□ -1.69
MCF2-201ENST00000338585 KAT2BQ92831 832 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 HVCN1Q96D96 273 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 BICD1Q96G01 975 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 ZBTB45Q96K62 511 aaPredicted RBP4.52□□□□□ -1.69
MCF2-201ENST00000338585 NLRP4Q96MN2 994 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 CHP1Q99653 195 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 DESI2Q9BSY9 194 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 MKNK1Q9BUB5 465 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 TARS2Q9BW92 718 aaKnown RBP4.52□□□□□ -1.69
MCF2-201ENST00000338585 LSM14BQ9BX40 385 aaKnown RBP4.52□□□□□ -1.69
MCF2-201ENST00000338585 HAPLN2Q9GZV7 340 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 METTL14Q9HCE5 456 aaKnown RBP4.52□□□□□ -1.69
MCF2-201ENST00000338585 NLRC4Q9NPP4 1024 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 SPTLC3Q9NUV7 552 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 SETD4Q9NVD3 440 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 RNF186Q9NXI6 227 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 SUCLA2Q9P2R7 463 aaPredicted RBP4.52□□□□□ -1.69
MCF2-201ENST00000338585 FAM184BQ9ULE4 1060 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 EXOC7Q9UPT5 735 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 LUC7L2Q9Y383 392 aaKnown RBP4.52□□□□□ -1.69
MCF2-201ENST00000338585 CENPFP49454 3210 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 EVPLQ92817 2033 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 A0A0U1RQJ8 604 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 K7ERI5 159 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 LRRN2O75325 713 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 TPM1P09493 284 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 ELNP15502 786 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 LIG4P49917 911 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 EMP3P54852 163 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 WNT7BP56706 349 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 SP3Q02447 781 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 PPP3CAQ08209 521 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 BFSP1Q12934 665 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 PPFIA1Q13136 1202 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 HIC1Q14526 733 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 PPP2R5AQ15172 486 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 SNRNP35Q16560 246 aaKnown RBP4.52□□□□□ -1.69
MCF2-201ENST00000338585 BRDTQ58F21 947 aaPredicted RBP4.52□□□□□ -1.69
MCF2-201ENST00000338585 ZNF484Q5JVG2 852 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 ZBTB41Q5SVQ8 909 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 C1orf220Q5T0J3 134 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 MARCH8Q5T0T0 291 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 GJB7Q6PEY0 223 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 WDR59Q6PJI9 974 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 CCAR2Q8N163 923 aaKnown RBP4.52□□□□□ -1.69
MCF2-201ENST00000338585 CCDC112Q8NEF3 446 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 OR8K1Q8NGG5 319 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 ATRIPQ8WXE1 791 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 POMGNT1Q8WZA1 660 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 BAP1Q92560 729 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 DNAJC7Q99615 494 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 CCDC113Q9H0I3 377 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 MINDY3Q9H8M7 445 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 ANKFY1Q9P2R3 1169 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 AJAP1Q9UKB5 411 aaPredicted RBP4.52□□□□□ -1.69
MCF2-201ENST00000338585 ZNF215Q9UL58 517 aaPredicted RBP4.52□□□□□ -1.69
MCF2-201ENST00000338585 SIP14410 1827 aa4.52□□□□□ -1.69
MCF2-201ENST00000338585 LRRC53A6NM62 1247 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 ARHGAP6O43182 974 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 B4GALT5O43286 388 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 STX10O60499 249 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 MSCO60682 206 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 F2P00734 622 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 VTNP04004 478 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 PLEKP08567 350 aaPredicted RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 MYL3P08590 195 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 IQCF3P0C7M6 154 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 HARSP12081 509 aaKnown RBP4.51□□□□□ -1.69
MCF2-201ENST00000338585 CYBAP13498 195 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 FECHP22830 423 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 PON1P27169 355 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 GCLMP48507 274 aa4.51□□□□□ -1.69
MCF2-201ENST00000338585 FMO5P49326 533 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms