RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 RBBP8NLQ8NC74 664 aaPredicted RBP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 XAGE3Q8WTP9 111 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 NACC2Q96BF6 587 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 GPRASP2Q96D09 838 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 TRMT2BQ96GJ1 504 aaKnown RBP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 KAZALD1Q96I82 304 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 SLF1Q9BQI6 1058 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 LRRCC1Q9C099 1032 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 CCSER1Q9C0I3 900 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 PILRBQ9UKJ0 227 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 MAN2B2Q9Y2E5 1009 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 ATP11BQ9Y2G3 1177 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 PCDHB12Q9Y5F1 795 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 PCDHGA6Q9Y5G7 932 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 PCDHGA3Q9Y5H0 932 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 TRPV2Q9Y5S1 764 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 LRRFIP2Q9Y608 721 aaKnown RBP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 GPR179Q6PRD1 2367 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 NUTM2FA1L443 756 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 C6orf229H3BNL8 230 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 LAMTOR5O43504 91 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 ATP9AO75110 1047 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 N4BP1O75113 896 aaKnown RBP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 ZMYND10O75800 440 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 ABLIM3O94929 683 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 ONECUT2O95948 504 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 IGHEP01854 428 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 HNRNPLP14866 589 aaKnown RBP eCLIP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 PPIAP62937 165 aaKnown RBP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 MECOMQ03112 1051 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 NEXNQ0ZGT2 675 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 SCAPQ12770 1279 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 ART3Q13508 389 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 AAMPQ13685 434 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 KYAT1Q16773 422 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 LETM2Q2VYF4 491 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 TLK2Q86UE8 772 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 SKAP1Q86WV1 359 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF557Q8N988 423 aaPredicted RBP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 OR6C4Q8NGE1 309 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 HPS3Q969F9 1004 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 RUNDC1Q96C34 613 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 C1orf159Q96HA4 380 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 DNAJC2Q99543 621 aaKnown RBP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 CPEB1Q9BZB8 566 aaKnown RBP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 TWSG1Q9GZX9 223 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 ZMAT3Q9HA38 289 aaKnown RBP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 C5AR2Q9P296 337 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 TECTAO75443 2155 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 FRMPD2Q68DX3 1309 aaPredicted RBP1.88□□□□□ -2.11
LINC00643-201ENST00000334389 PDE4DIPQ5VU43 2346 aa1.88□□□□□ -2.11
LINC00643-201ENST00000334389 IGKV6-21A0A0C4DH24 114 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 A0A1W2PQD8 194 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 EYA2O00167 538 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 DHX15O43143 795 aaKnown RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 EPB41L2O43491 1005 aaKnown RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 TNFSF14O43557 240 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 PI15O43692 258 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 LDHBP07195 334 aaKnown RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 HOXC4P09017 264 aaPredicted RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ITGA6P23229 1130 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 TEAD1P28347 426 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 NDUFV1P49821 464 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 SFSWAPQ12872 951 aaKnown RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 USP4Q13107 963 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 MRPL58Q14197 206 aaKnown RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 DGKDQ16760 1214 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 PLA2G4EQ3MJ16 856 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 FBXO47Q5MNV8 452 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 LCE5AQ5TCM9 118 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 EMC10Q5UCC4 262 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 DNAJC14Q6Y2X3 702 aaPredicted RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ATG14Q6ZNE5 492 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 APLFQ8IW19 511 aaPredicted RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 SMCR8Q8TEV9 937 aaPredicted RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 CHURC1Q8WUH1 139 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF707Q96C28 371 aaPredicted RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 CASD1Q96PB1 797 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 FCRL4Q96PJ5 515 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 TMEM39BQ9GZU3 492 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 CCDC86Q9H6F5 360 aaKnown RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 MLXIPLQ9NP71 852 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 DNMT3BQ9UBC3 853 aaKnown RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ADAMTS1Q9UHI8 967 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 EDARQ9UNE0 448 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 KRBA1A5PL33 1030 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 WASH4PA8MWX3 477 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 TRAK2O60296 914 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 APBB3O95704 486 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 CER1O95813 267 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ITGB1P05556 798 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 HOXC13P31276 330 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 INPP5BP32019 993 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ALDH5A1P51649 535 aaPredicted RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 CCR5P51681 352 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 ZNF445P59923 1031 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 IFIT5Q13325 482 aaKnown RBP1.87□□□□□ -2.11
LINC00643-201ENST00000334389 RAB33AQ14088 237 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 MYBPC2Q14324 1141 aa1.87□□□□□ -2.11
LINC00643-201ENST00000334389 UBE3CQ15386 1083 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms