RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 TFDP2Q14188 446 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 FLOT2Q14254 428 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 SLC18A3Q16572 532 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 SIRT1Q96EB6 747 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 CYP26B1Q9NR63 512 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 PTTG2Q9NZH5 202 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 MROH5Q6ZUA9 1318 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 ABCC10Q5T3U5 1492 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 POTECB2RU33 542 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 PSMC3P17980 439 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 POLA2Q14181 598 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 TATDN2Q93075 761 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 BORCS5Q969J3 196 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 CEP95Q96GE4 821 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 NT5C1BQ96P26 610 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 ERGIC2Q96RQ1 377 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 FBXO28Q9NVF7 368 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 DDX56Q9NY93 547 aaKnown RBP4.96□□□□□ -1.62
SCN1A-220ENST00000641603 A0A087WXM4 84 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 ARHGEF35A5YM69 484 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 TSPAN9O75954 239 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 HSPA4LO95757 839 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 RARGP13631 454 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 PALB2Q86YC2 1186 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 PLBD2Q8NHP8 589 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 PPP1R2P1Q96PQ5 205 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 TLK1Q9UKI8 766 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 DMTF1Q9Y222 760 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 DTNAQ9Y4J8 743 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 PENKP01210 267 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-220ENST00000641603 POLGP54098 1239 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-220ENST00000641603 ARHGAP44Q17R89 818 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 CMPK2Q5EBM0 449 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 SPDYAQ5MJ70 313 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 LMBR1LQ6UX01 489 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 PM20D2Q8IYS1 436 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 RBM46Q8TBY0 533 aaKnown RBP4.96□□□□□ -1.62
SCN1A-220ENST00000641603 SLC26A7Q8TE54 656 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 BTBD6Q96KE9 485 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 NLRP1Q9C000 1473 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 ATP10BO94823 1461 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 NCAPD2Q15021 1401 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 PALMO75781 387 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 MRPS9P82933 396 aaKnown RBP4.96□□□□□ -1.62
SCN1A-220ENST00000641603 PPIDQ08752 370 aaKnown RBP4.96□□□□□ -1.62
SCN1A-220ENST00000641603 NXNQ6DKJ4 435 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 AAGABQ6PD74 315 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 C1orf228Q6PIY5 440 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 NCAPG2Q86XI2 1143 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 RMDN1Q96DB5 314 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 ERP27Q96DN0 273 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 MMS19Q96T76 1030 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 CARD14Q9BXL6 1004 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 TEX12Q9BXU0 123 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 VPS33BQ9H267 617 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 PLCH2O75038 1416 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 RNF103-CHMP3A0A140T963 221 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 TMEM63BQ5T3F8 832 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 PPP1R18Q6NYC8 613 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 TMEM110Q86TL2 294 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 RNPC3Q96LT9 517 aaKnown RBP4.96□□□□□ -1.62
SCN1A-220ENST00000641603 STN1Q9H668 368 aaKnown RBP4.96□□□□□ -1.62
SCN1A-220ENST00000641603 MAGEE1Q9HCI5 957 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 WDR91A4D1P6 747 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 TCP11X1B4DZS4 312 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 F8W8V4 182 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 FTCDO95954 541 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 TNNC2P02585 160 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 RECQLP46063 649 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-220ENST00000641603 ERP44Q9BS26 406 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 TRPV6Q9H1D0 765 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 TMEM206Q9H813 350 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 ANLNQ9NQW6 1124 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 CFAP69A5D8W1 941 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TMEM191CA6NGB0 347 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 GNGT2O14610 69 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 KCNQ3O43525 872 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TMEM191BP0C7N4 346 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 IL12AP29459 219 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 RNASE9P60153 205 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 PUM3Q15397 648 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 FAM47EQ6ZV65 393 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TTC39CQ8N584 583 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 KCNB2Q92953 911 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 EME1Q96AY2 570 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 ZIM3Q96PE6 472 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 SAMSN1Q9NSI8 373 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 PANK4Q9NVE7 773 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 DNAJB4Q9UDY4 337 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 DDX25Q9UHL0 483 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 HBS1LQ9Y450 684 aaKnown RBP4.95□□□□□ -1.62
SCN1A-220ENST00000641603 MAGI2Q86UL8 1455 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 ANKRD65E5RJM6 399 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 ZMYND10O75800 440 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 PLS3P13797 630 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 POLD1P28340 1107 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 PSEN1P49768 467 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 TAB1Q15750 504 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 LPIN2Q92539 896 aa4.95□□□□□ -1.62
SCN1A-220ENST00000641603 LRRC39Q96DD0 335 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms