RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 FRMD3A2A2Y4 597 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 ZSCAN9O15535 394 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 UBE4BO95155 1302 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 CYP2B6P20813 491 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 PPP6R3Q5H9R7 873 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 C20orf194Q5TEA3 1177 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 DHTKD1Q96HY7 919 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 NUP85Q9BW27 656 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 ZNF335Q9H4Z2 1342 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 SAE1Q9UBE0 346 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 TRAF3IP3Q9Y228 551 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 ATP11BQ9Y2G3 1177 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 GOLGA8IPA6NC78 632 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 KPNA6O60684 536 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 DARSP14868 501 aaKnown RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 ESRRGP62508 458 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 APBA1Q02410 837 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 SLMAPQ14BN4 828 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 SP8Q8IXZ3 490 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 SLC16A10Q8TF71 515 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 OTULINQ96BN8 352 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 FAF2Q96CS3 445 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 NAF1Q96HR8 494 aaKnown RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 PHACTR3Q96KR7 559 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 RMDN2Q96LZ7 410 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 ATG3Q9NT62 314 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 PSMD3O43242 534 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 GNRH1P01148 92 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 POLD3Q15054 466 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 NLNQ9BYT8 704 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 ZWILCHQ9H900 591 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 SH3GLB2Q9NR46 395 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 PSMD14O00487 310 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 TOM1L1O75674 476 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 KRT14P02533 472 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 AMHP03971 560 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 PPP3CCP48454 512 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 MMP14P50281 582 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 MAPRE1Q15691 268 aaKnown RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 TTC13Q8NBP0 860 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 VMP1Q96GC9 406 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 TDRD3Q9H7E2 651 aaKnown RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 PSD3Q9NYI0 1048 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 A0A0G2JLW4 131 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 C17orf102A2RUQ5 167 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 E2F6O75461 281 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 SUN1O94901 812 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 PHKA1P46020 1223 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 MGAT5BQ3V5L5 792 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 CNPY4Q8N129 248 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 ZSCAN18Q8TBC5 510 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 PPP1R14AQ96A00 147 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 PAWRQ96IZ0 340 aaKnown RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 CDK5RAP1Q96SZ6 601 aaKnown RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 ZBTB1Q9Y2K1 713 aa6.52□□□□□ -1.37
SCN1A-217ENST00000637988 NUP153P49790 1475 aaKnown RBP6.52□□□□□ -1.37
SCN1A-217ENST00000637988 UBA6A0AVT1 1052 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-217ENST00000637988 C2CD2LO14523 706 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 GPR182O15218 404 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 KRT8P05787 483 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 EEF1B2P24534 225 aaKnown RBP6.51□□□□□ -1.37
SCN1A-217ENST00000637988 PCSK1P29120 753 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 CENPAP49450 140 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 FOXD4Q12950 439 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-217ENST00000637988 PNOCQ13519 176 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 MTMR2Q13614 643 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 SCARF1Q14162 830 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 TBC1D9BQ66K14 1250 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 KRT80Q6KB66 452 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 NLRP10Q86W26 655 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 CLASP1Q7Z460 1538 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 PRR23AA6NEV1 266 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 PLA2G4BP0C869 781 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 SKP1P63208 163 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 FKBP3Q00688 224 aaKnown RBP6.51□□□□□ -1.37
SCN1A-217ENST00000637988 TTC31Q49AM3 519 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-217ENST00000637988 TRIM55Q9BYV6 548 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 TMEM39AQ9NV64 488 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 AIPL1Q9NZN9 384 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 A8MXQ7 604 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 ZBTB5O15062 677 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 CFLARO15519 480 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 CKBP12277 381 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 DUOXA2Q1HG44 320 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 SV2CQ496J9 727 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 SNX30Q5VWJ9 437 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 RCSD1Q6JBY9 416 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 PPP1R18Q6NYC8 613 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 SYMPKQ92797 1274 aaKnown RBP6.51□□□□□ -1.37
SCN1A-217ENST00000637988 MAGOHBQ96A72 148 aaKnown RBP6.51□□□□□ -1.37
SCN1A-217ENST00000637988 MED15Q96RN5 788 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 CCDC78A2IDD5 438 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 TEX28O15482 410 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 TAP1Q03518 808 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 CENPUQ71F23 418 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 SPATA18Q8TC71 538 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 CNOT6LQ96LI5 555 aaKnown RBP6.51□□□□□ -1.37
SCN1A-217ENST00000637988 GBP5Q96PP8 586 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 PIGSQ96S52 555 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms