RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 SARSP49591 514 aaKnown RBP20.12■□□□□ 0.81
CLN3-243ENST00000635973 CRYBB1P53674 252 aaPredicted RBP20.12■□□□□ 0.81
CLN3-243ENST00000635973 KIZQ2M2Z5 673 aa20.12■□□□□ 0.81
CLN3-243ENST00000635973 PUS10Q3MIT2 529 aaKnown RBP20.12■□□□□ 0.81
CLN3-243ENST00000635973 SPOUT1Q5T280 376 aaKnown RBP20.12■□□□□ 0.81
CLN3-243ENST00000635973 OSMRQ99650 979 aa20.12■□□□□ 0.81
CLN3-243ENST00000635973 DHX33Q9H6R0 707 aaKnown RBP20.12■□□□□ 0.81
CLN3-243ENST00000635973 ERVK-5Q9HDB9 667 aa20.12■□□□□ 0.81
CLN3-243ENST00000635973 C1orf112Q9NSG2 853 aa20.12■□□□□ 0.81
CLN3-243ENST00000635973 SUCLA2Q9P2R7 463 aaPredicted RBP20.12■□□□□ 0.81
CLN3-243ENST00000635973 ST3GAL5Q9UNP4 418 aa20.12■□□□□ 0.81
CLN3-243ENST00000635973 MRPL42Q9Y6G3 142 aaKnown RBP20.12■□□□□ 0.81
CLN3-243ENST00000635973 IGKV6-21A0A0C4DH24 114 aa20.11■□□□□ 0.81
CLN3-243ENST00000635973 GRM6O15303 877 aa20.11■□□□□ 0.81
CLN3-243ENST00000635973 CSPG5O95196 566 aa20.11■□□□□ 0.81
CLN3-243ENST00000635973 ME1P48163 572 aa20.11■□□□□ 0.81
CLN3-243ENST00000635973 PTCRAQ6ISU1 281 aaPredicted RBP20.11■□□□□ 0.81
CLN3-243ENST00000635973 LINC01465Q8N7H1 131 aa20.11■□□□□ 0.81
CLN3-243ENST00000635973 TCP11Q8WWU5 503 aa20.11■□□□□ 0.81
CLN3-243ENST00000635973 PPP2R3CQ969Q6 453 aa20.11■□□□□ 0.81
CLN3-243ENST00000635973 TMEM143Q96AN5 459 aa20.11■□□□□ 0.81
CLN3-243ENST00000635973 PABPC5Q96DU9 382 aaKnown RBP20.11■□□□□ 0.81
CLN3-243ENST00000635973 ADAM2Q99965 735 aa20.11■□□□□ 0.81
CLN3-243ENST00000635973 C1QTNF1Q9BXJ1 281 aa20.11■□□□□ 0.81
CLN3-243ENST00000635973 BHMT2Q9H2M3 363 aa20.11■□□□□ 0.81
CLN3-243ENST00000635973 TMX1Q9H3N1 280 aa20.11■□□□□ 0.81
CLN3-243ENST00000635973 CDHR5Q9HBB8 845 aa20.11■□□□□ 0.81
CLN3-243ENST00000635973 CLDND1Q9NY35 253 aa20.11■□□□□ 0.81
CLN3-243ENST00000635973 FAM50BQ9Y247 325 aa20.11■□□□□ 0.81
CLN3-243ENST00000635973 E9PMD0 336 aa20.1■□□□□ 0.81
CLN3-243ENST00000635973 SSBP05455 408 aaKnown RBP eCLIP20.1■□□□□ 0.81
CLN3-243ENST00000635973 DDIT3P35638 169 aa20.1■□□□□ 0.81
CLN3-243ENST00000635973 NLRP11P59045 1033 aaKnown RBP20.1■□□□□ 0.81
CLN3-243ENST00000635973 DRP2Q13474 957 aa20.1■□□□□ 0.81
CLN3-243ENST00000635973 KARSQ15046 597 aaKnown RBP20.1■□□□□ 0.81
CLN3-243ENST00000635973 NAALADL2Q58DX5 795 aa20.1■□□□□ 0.81
CLN3-243ENST00000635973 HYIQ5T013 277 aa20.1■□□□□ 0.81
CLN3-243ENST00000635973 PADI6Q6TGC4 694 aa20.1■□□□□ 0.81
CLN3-243ENST00000635973 SLC24A5Q71RS6 500 aa20.1■□□□□ 0.81
CLN3-243ENST00000635973 RHPN2Q8IUC4 686 aa20.1■□□□□ 0.81
CLN3-243ENST00000635973 ZNF710Q8N1W2 664 aa20.1■□□□□ 0.81
CLN3-243ENST00000635973 NLRP7Q8WX94 980 aa20.1■□□□□ 0.81
CLN3-243ENST00000635973 PSPC1Q8WXF1 523 aaKnown RBP20.1■□□□□ 0.81
CLN3-243ENST00000635973 P2RX5Q93086 422 aa20.1■□□□□ 0.81
CLN3-243ENST00000635973 ZNF668Q96K58 619 aaPredicted RBP20.1■□□□□ 0.81
CLN3-243ENST00000635973 ALG13Q9NP73 1137 aaKnown RBP20.1■□□□□ 0.81
CLN3-243ENST00000635973 TSHZ2Q9NRE2 1034 aa20.1■□□□□ 0.81
CLN3-243ENST00000635973 RGS18Q9NS28 235 aa20.1■□□□□ 0.81
CLN3-243ENST00000635973 CCDC39Q9UFE4 941 aa20.1■□□□□ 0.81
CLN3-243ENST00000635973 CIZ1Q9ULV3 898 aaPredicted RBP20.1■□□□□ 0.81
CLN3-243ENST00000635973 RBM19Q9Y4C8 960 aaKnown RBP20.1■□□□□ 0.81
CLN3-243ENST00000635973 ATG2AQ2TAZ0 1938 aa20.1■□□□□ 0.81
CLN3-243ENST00000635973 H3BQ06 376 aaPredicted RBP20.09■□□□□ 0.81
CLN3-243ENST00000635973 CUTAO60888 179 aa20.09■□□□□ 0.81
CLN3-243ENST00000635973 EYA4O95677 639 aa20.09■□□□□ 0.81
CLN3-243ENST00000635973 CDC42EP1Q00587 391 aa20.09■□□□□ 0.81
CLN3-243ENST00000635973 TMEM119Q4V9L6 283 aa20.09■□□□□ 0.81
CLN3-243ENST00000635973 MAEAQ7L5Y9 396 aa20.09■□□□□ 0.81
CLN3-243ENST00000635973 KCTD17Q8N5Z5 321 aa20.09■□□□□ 0.81
CLN3-243ENST00000635973 MCPH1Q8NEM0 835 aa20.09■□□□□ 0.81
CLN3-243ENST00000635973 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.09■□□□□ 0.81
CLN3-243ENST00000635973 TMEM40Q8WWA1 233 aa20.09■□□□□ 0.81
CLN3-243ENST00000635973 EPSTI1Q96J88 318 aa20.09■□□□□ 0.81
CLN3-243ENST00000635973 NLRP4Q96MN2 994 aa20.09■□□□□ 0.81
CLN3-243ENST00000635973 PNMA5Q96PV4 448 aa20.09■□□□□ 0.81
CLN3-243ENST00000635973 CCSER1Q9C0I3 900 aa20.09■□□□□ 0.81
CLN3-243ENST00000635973 AAASQ9NRG9 546 aa20.09■□□□□ 0.81
CLN3-243ENST00000635973 PLAGL2Q9UPG8 496 aa20.09■□□□□ 0.81
CLN3-243ENST00000635973 FNDC1Q4ZHG4 1894 aaPredicted RBP20.09■□□□□ 0.81
CLN3-243ENST00000635973 LINC00271P0C7V0 271 aa20.08■□□□□ 0.81
CLN3-243ENST00000635973 ZSCAN20P17040 1043 aaPredicted RBP20.08■□□□□ 0.81
CLN3-243ENST00000635973 PLCG1P19174 1290 aa20.08■□□□□ 0.81
CLN3-243ENST00000635973 SSTR3P32745 418 aaPredicted RBP20.08■□□□□ 0.81
CLN3-243ENST00000635973 GPC3P51654 580 aa20.08■□□□□ 0.81
CLN3-243ENST00000635973 FAM102BQ5T8I3 360 aa20.08■□□□□ 0.81
CLN3-243ENST00000635973 KCNK18Q7Z418 384 aa20.08■□□□□ 0.81
CLN3-243ENST00000635973 CRIPAKQ8N1N5 446 aa20.08■□□□□ 0.81
CLN3-243ENST00000635973 CHAMP1Q96JM3 812 aa20.08■□□□□ 0.81
CLN3-243ENST00000635973 SPATA32Q96LK8 384 aa20.08■□□□□ 0.81
CLN3-243ENST00000635973 IGFLR1Q9H665 355 aa20.08■□□□□ 0.81
CLN3-243ENST00000635973 XPNPEP1Q9NQW7 623 aa20.08■□□□□ 0.81
CLN3-243ENST00000635973 PCDHB12Q9Y5F1 795 aa20.08■□□□□ 0.81
CLN3-243ENST00000635973 COL4A3BPQ9Y5P4 624 aa20.08■□□□□ 0.81
CLN3-243ENST00000635973 TBKBP1A7MCY6 615 aa20.07■□□□□ 0.8
CLN3-243ENST00000635973 MGEA5O60502 916 aa20.07■□□□□ 0.8
CLN3-243ENST00000635973 GPR32O75388 356 aa20.07■□□□□ 0.8
CLN3-243ENST00000635973 IL9P15248 144 aa20.07■□□□□ 0.8
CLN3-243ENST00000635973 GATMP50440 423 aa20.07■□□□□ 0.8
CLN3-243ENST00000635973 USP49Q70CQ1 688 aa20.07■□□□□ 0.8
CLN3-243ENST00000635973 FAM228AQ86W67 206 aa20.07■□□□□ 0.8
CLN3-243ENST00000635973 KLHL23Q8NBE8 558 aa20.07■□□□□ 0.8
CLN3-243ENST00000635973 PRPF31Q8WWY3 499 aaKnown RBP20.07■□□□□ 0.8
CLN3-243ENST00000635973 SCAND2PQ9GZW5 306 aaPredicted RBP20.07■□□□□ 0.8
CLN3-243ENST00000635973 POLR3FQ9H1D9 316 aaPredicted RBP20.07■□□□□ 0.8
CLN3-243ENST00000635973 MYO7AQ13402 2215 aa20.07■□□□□ 0.8
CLN3-243ENST00000635973 GRXCR2A6NFK2 248 aa20.06■□□□□ 0.8
CLN3-243ENST00000635973 PLA2G4BP0C869 781 aa20.06■□□□□ 0.8
CLN3-243ENST00000635973 SRGAP2CP0DJJ0 459 aa20.06■□□□□ 0.8
CLN3-243ENST00000635973 CYP11B2P19099 503 aa20.06■□□□□ 0.8
CLN3-243ENST00000635973 ZNF410Q86VK4 478 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms