RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 RGS3P49796 1198 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 SLC6A3Q01959 620 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 FOXF2Q12947 444 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 MAPK7Q13164 816 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 SPIDRQ14159 915 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 DCAF17Q5H9S7 520 aaPredicted RBP1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 CATSPEREQ5SY80 951 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 C16orf59Q7L2K0 433 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 NOSTRINQ8IVI9 506 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 SRRM1Q8IYB3 904 aaKnown RBP1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 CMTM4Q8IZR5 234 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 CELF2-AS1Q8N7Q2 184 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 FAM98AQ8NCA5 519 aaKnown RBP1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 PLA2G15Q8NCC3 412 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 HNRNPLLQ8WVV9 542 aaKnown RBP1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 WASF1Q92558 559 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 NKD2Q969F2 451 aaPredicted RBP1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 SGSM3Q96HU1 749 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 DYDC2Q96IM9 177 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 ZNF778Q96MU6 729 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 TEX101Q9BY14 249 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 KRTAP1-5Q9BYS1 174 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 TLK1Q9UKI8 766 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 ASB1Q9Y576 335 aa1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 EIF4G1Q04637 1599 aaKnown RBP1.71□□□□□ -2.14
SMARCB1-209ENST00000635578 ARHGEF17Q96PE2 2063 aaPredicted RBP1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 CCDC85CA6NKD9 419 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 TMEM200CA6NKL6 621 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 ARVCFO00192 962 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 DAPK3O43293 454 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 HIP1RO75146 1068 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 RBMXL2O75526 392 aaKnown RBP1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 MATN4O95460 622 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 ONECUT2O95948 504 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 CFBP00751 764 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 IGLV2-14P01704 120 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 DDX6P26196 483 aaKnown RBP eCLIP1.7□□□□□ -2.149e-7■■■■■ 33.4
SMARCB1-209ENST00000635578 SMARCA2P51531 1590 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 RNASE9P60153 205 aaKnown RBP1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 GUCY1B3Q02153 619 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 ALDH6A1Q02252 535 aaKnown RBP1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 ARID5AQ03989 594 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 SRSF4Q08170 494 aaKnown RBP1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 TP53BP2Q13625 1128 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 DGKDQ16760 1214 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 SLFN12LQ6IEE8 588 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 GDF7Q7Z4P5 450 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 APBB1IPQ7Z5R6 666 aaPredicted RBP1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 ARHGEF19Q8IW93 802 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 LILRA3Q8N6C8 439 aaPredicted RBP1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 CPEB3Q8NE35 698 aaKnown RBP1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 SLC7A14Q8TBB6 771 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 ASB10Q8WXI3 467 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 LINC00476Q8WZB0 136 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 PTPRN2Q92932 1015 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 FOXB1Q99853 325 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 NDC1Q9BTX1 674 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 DUSP26Q9BV47 211 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 C14orf93Q9H972 538 aaKnown RBP1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 ZNF408Q9H9D4 720 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 POLR3BQ9NW08 1133 aaPredicted RBP1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 WDR3Q9UNX4 943 aaKnown RBP eCLIP1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 HDAC5Q9UQL6 1122 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 COQ6Q9Y2Z9 468 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 B3GALT1Q9Y5Z6 326 aa1.7□□□□□ -2.14
SMARCB1-209ENST00000635578 COL3A1P02461 1466 aaPredicted RBP1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 NACADO15069 1562 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 WDR91A4D1P6 747 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 LRRC3CA6NJW4 275 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 LEFTY2O00292 366 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 HOXA3O43365 443 aaPredicted RBP1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 DNAJC6O75061 913 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 MAFO75444 373 aaPredicted RBP1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 KRT37O76014 449 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 STK10O94804 968 aaKnown RBP1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 CRTAMO95727 393 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 ITGAMP11215 1152 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 HOXB6P17509 224 aaKnown RBP1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 ATP2B1P20020 1258 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 GTF2F1P35269 517 aaKnown RBP eCLIP1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 CASRP41180 1078 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 KIR2DL3P43628 341 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 LACTBP83111 547 aaPredicted RBP1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 ROM1Q03395 351 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 MPP3Q13368 585 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 VPS72Q15906 364 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 DDR2Q16832 855 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 BEAN1Q3B7T3 259 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 NAALADL2Q58DX5 795 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 FAM209AQ5JX71 171 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 PRAMEF9Q5VWM5 478 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 BRAPQ7Z569 592 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 GRASPQ7Z6J2 395 aaPredicted RBP1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 RTN4RL1Q86UN2 441 aaPredicted RBP1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 XYLT1Q86Y38 959 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 LRRC47Q8N1G4 583 aaKnown RBP1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 Q8N9P0 234 aaPredicted RBP1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 GLB1L3Q8NCI6 653 aaPredicted RBP1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 OR52N2Q8NGI0 321 aa1.69□□□□□ -2.14
SMARCB1-209ENST00000635578 CAGE1Q8TC20 777 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms