RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 NAA35Q5VZE5 725 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 CHST13Q8NET6 341 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 NLRP7Q8WX94 980 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 IFIH1Q9BYX4 1025 aaKnown RBP11.48□□□□□ -0.57
VPS11-208ENST00000621676 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.48□□□□□ -0.57
VPS11-208ENST00000621676 PPP2R3BQ9Y5P8 575 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 SPATA31C2B4DYI2 1134 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 AFPP02771 609 aaKnown RBP11.48□□□□□ -0.57
VPS11-208ENST00000621676 PLS3P13797 630 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 KLRC1P26715 233 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 PSMC2P35998 433 aaKnown RBP11.48□□□□□ -0.57
VPS11-208ENST00000621676 MAGEA1P43355 309 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 NLRP11P59045 1033 aaKnown RBP11.48□□□□□ -0.57
VPS11-208ENST00000621676 LRRC63Q05C16 580 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 TBX2Q13207 712 aaPredicted RBP11.48□□□□□ -0.57
VPS11-208ENST00000621676 MOGSQ13724 837 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 ZFYVE27Q5T4F4 411 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 MOXD1Q6UVY6 613 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 ABHD15Q6UXT9 468 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 CYP26C1Q6V0L0 522 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 PALB2Q86YC2 1186 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 TATDN2Q93075 761 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 FNBP1Q96RU3 617 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 MINDY3Q9H8M7 445 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 TYW1Q9NV66 732 aaKnown RBP11.48□□□□□ -0.57
VPS11-208ENST00000621676 FLRT1Q9NZU1 646 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 KLK14Q9P0G3 267 aa11.48□□□□□ -0.57
VPS11-208ENST00000621676 DDX41Q9UJV9 622 aaKnown RBP11.48□□□□□ -0.57
VPS11-208ENST00000621676 A0A087WZ62 844 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 A0A087X0T9 212 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 SOCS7O14512 581 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 ZNF263O14978 683 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 KIF5CO60282 957 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 OATP04181 439 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 FAM228BP0C875 321 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 STRN3Q13033 797 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 CRHR2Q13324 411 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 SLC35C1Q96A29 364 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 FDXACB1Q9BRP7 624 aaPredicted RBP11.47□□□□□ -0.57
VPS11-208ENST00000621676 SZT2Q5T011 3432 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 STX10O60499 249 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 FGFR1OPO95684 399 aaKnown RBP11.47□□□□□ -0.57
VPS11-208ENST00000621676 SSR1P43307 286 aaKnown RBP11.47□□□□□ -0.57
VPS11-208ENST00000621676 GTF2A2P52657 109 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 AMHR2Q16671 573 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 KIAA0753Q2KHM9 967 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 CAGE1Q8TC20 777 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 TAS1R2Q8TE23 839 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 ZC3H15Q8WU90 426 aaKnown RBP11.47□□□□□ -0.57
VPS11-208ENST00000621676 L3MBTL3Q96JM7 780 aaPredicted RBP11.47□□□□□ -0.57
VPS11-208ENST00000621676 C12orf42Q96LP6 360 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 FIZ1Q96SL8 496 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 MAGEF1Q9HAY2 307 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 ATP6V0A4Q9HBG4 840 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 DNAJC12Q9UKB3 198 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 TBX20Q9UMR3 447 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 UCHL3P15374 230 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 GLRA2P23416 452 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 PON1P27169 355 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 JAK3P52333 1124 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 KIF11P52732 1056 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 ETF1P62495 437 aaKnown RBP11.47□□□□□ -0.57
VPS11-208ENST00000621676 SNRNP35Q16560 246 aaKnown RBP11.47□□□□□ -0.57
VPS11-208ENST00000621676 LDLRAD1Q5T700 205 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 SFMBT2Q5VUG0 894 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 JAKMIP2Q96AA8 810 aa11.47□□□□□ -0.57
VPS11-208ENST00000621676 REXO2Q9Y3B8 237 aaKnown RBP11.47□□□□□ -0.57
VPS11-208ENST00000621676 MRPL42Q9Y6G3 142 aaKnown RBP11.47□□□□□ -0.57
VPS11-208ENST00000621676 SYNGAP1Q96PV0 1343 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 FOXN3O00409 490 aaPredicted RBP11.46□□□□□ -0.57
VPS11-208ENST00000621676 ZSCAN12O43309 604 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 TLR2O60603 784 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 PLA2G6O60733 806 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 COPB2P35606 906 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 PTK2Q05397 1052 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 EHHADHQ08426 723 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 TTLL4Q14679 1199 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 DRAP1Q14919 205 aaPredicted RBP11.46□□□□□ -0.57
VPS11-208ENST00000621676 ZCWPW2Q504Y3 356 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 CXCL17Q6UXB2 119 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 ARHGEF19Q8IW93 802 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 SLC20A1Q8WUM9 679 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 SPIRE2Q8WWL2 714 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 GPRASP2Q96D09 838 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 BTBD6Q96KE9 485 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 FGD4Q96M96 766 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 SUCLA2Q9P2R7 463 aaPredicted RBP11.46□□□□□ -0.57
VPS11-208ENST00000621676 SALL4Q9UJQ4 1053 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 DOCK5Q9H7D0 1870 aa11.46□□□□□ -0.57
VPS11-208ENST00000621676 KIF20AO95235 890 aa11.46□□□□□ -0.58
VPS11-208ENST00000621676 GJB6O95452 261 aa11.46□□□□□ -0.58
VPS11-208ENST00000621676 MYL1P05976 194 aa11.46□□□□□ -0.58
VPS11-208ENST00000621676 NUMBP49757 651 aa11.46□□□□□ -0.58
VPS11-208ENST00000621676 CCNA1P78396 465 aa11.46□□□□□ -0.58
VPS11-208ENST00000621676 PSMD2Q13200 908 aa11.46□□□□□ -0.58
VPS11-208ENST00000621676 XKR3Q5GH77 459 aa11.46□□□□□ -0.58
VPS11-208ENST00000621676 SAPCD2Q86UD0 394 aa11.46□□□□□ -0.58
VPS11-208ENST00000621676 TRIM59Q8IWR1 403 aa11.46□□□□□ -0.58
VPS11-208ENST00000621676 TMEM161BQ8NDZ6 487 aa11.46□□□□□ -0.58
VPS11-208ENST00000621676 OR6J1Q8NGC5 347 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms