RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 PAAF1Q9BRP4 392 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 BLOC1S4Q9NUP1 217 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 INPP5FQ9Y2H2 1132 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 DOCK6Q96HP0 2047 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 KDM3AQ9Y4C1 1321 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 TBKBP1A7MCY6 615 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 INO80B-WBP1J3KQ70 363 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 M0QZ92 97 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 PER2O15055 1255 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 MEFVO15553 781 aaPredicted RBP6.34□□□□□ -1.39
CPNE3-208ENST00000614678 AMHP03971 560 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 DNM1Q05193 864 aaKnown RBP6.34□□□□□ -1.39
CPNE3-208ENST00000614678 EEF1DP3Q658K8 133 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 RBM23Q86U06 439 aaKnown RBP6.34□□□□□ -1.39
CPNE3-208ENST00000614678 MAP7D2Q96T17 732 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 INO80BQ9C086 356 aaPredicted RBP6.34□□□□□ -1.39
CPNE3-208ENST00000614678 NXF3Q9H4D5 531 aaKnown RBP6.34□□□□□ -1.39
CPNE3-208ENST00000614678 LRRIQ4A6NIV6 560 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 LINC01565O15544 149 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 ARF4P18085 180 aaPredicted RBP6.34□□□□□ -1.39
CPNE3-208ENST00000614678 ARL2P36404 184 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 MBTD1Q05BQ5 628 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 BTG3Q14201 252 aaPredicted RBP6.34□□□□□ -1.39
CPNE3-208ENST00000614678 MCM6Q14566 821 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 DTHD1Q6ZMT9 781 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 TEX2Q8IWB9 1127 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 SMG8Q8ND04 991 aaKnown RBP6.34□□□□□ -1.39
CPNE3-208ENST00000614678 SNX21Q969T3 373 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 ZBTB45Q96K62 511 aaPredicted RBP6.34□□□□□ -1.39
CPNE3-208ENST00000614678 FAM167AQ96KS9 214 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 B3GALT6Q96L58 329 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 GBP3Q9H0R5 595 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 RGS18Q9NS28 235 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 FBXO2Q9UK22 296 aaPredicted RBP6.34□□□□□ -1.39
CPNE3-208ENST00000614678 CEP131Q9UPN4 1083 aa6.34□□□□□ -1.39
CPNE3-208ENST00000614678 MAGEB2O15479 319 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 TSPAN1O60635 241 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 MCM2P49736 904 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 CLUL1Q15846 466 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 NAALADL2Q58DX5 795 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 RILPL1Q5EBL4 403 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 AGMOQ6ZNB7 445 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 ZSWIM2Q8NEG5 633 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 RDM1Q8NG50 284 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 CASD1Q96PB1 797 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 STXBP5LQ9Y2K9 1186 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 POMCP01189 267 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 ITGB1P05556 798 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 PLCG1P19174 1290 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 OSTNP61366 133 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 KCNA1Q09470 495 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 TWF2Q6IBS0 349 aaKnown RBP6.33□□□□□ -1.4
CPNE3-208ENST00000614678 RINT1Q6NUQ1 792 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 CATSPER4Q7RTX7 472 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 ECHDC2Q86YB7 292 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 GRAMD1CQ8IYS0 662 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 FAM177A1Q8N128 213 aaPredicted RBP6.33□□□□□ -1.4
CPNE3-208ENST00000614678 KLHL23Q8NBE8 558 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 SP7Q8TDD2 431 aaPredicted RBP6.33□□□□□ -1.4
CPNE3-208ENST00000614678 PSPC1Q8WXF1 523 aaKnown RBP6.33□□□□□ -1.4
CPNE3-208ENST00000614678 SYMPKQ92797 1274 aaKnown RBP6.33□□□□□ -1.4
CPNE3-208ENST00000614678 HAPLN2Q9GZV7 340 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 CWH43Q9H720 699 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 NOL7Q9UMY1 257 aaKnown RBP6.33□□□□□ -1.4
CPNE3-208ENST00000614678 INSL6Q9Y581 213 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 MYH15Q9Y2K3 1946 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 MYH11P35749 1972 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 HIP1RO75146 1068 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 DDHD2O94830 711 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 TMOD1P28289 359 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 CTNNB1P35222 781 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 PEX3P56589 373 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 ERVFC1P60507 584 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 ZNF598Q86UK7 904 aaKnown RBP6.33□□□□□ -1.4
CPNE3-208ENST00000614678 HSCBQ8IWL3 235 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 NME8Q8N427 588 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 PHOSPHO2Q8TCD6 241 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 POLR3CQ9BUI4 534 aaPredicted RBP6.33□□□□□ -1.4
CPNE3-208ENST00000614678 ATP6V0A4Q9HBG4 840 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 TBC1D7Q9P0N9 293 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 H3BQ06 376 aaPredicted RBP6.33□□□□□ -1.4
CPNE3-208ENST00000614678 TRAPPC10P48553 1259 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 SPAG1Q07617 926 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 RAB30Q15771 203 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 ZBTB41Q5SVQ8 909 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 EP400NLQ6ZTU2 488 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 C1orf186Q6ZWK4 172 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 SLC24A5Q71RS6 500 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 DYMQ7RTS9 669 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 GSTCDQ8NEC7 633 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 VN1R3Q9BXE9 311 aa6.33□□□□□ -1.4
CPNE3-208ENST00000614678 SLC16A4O15374 487 aa6.32□□□□□ -1.4
CPNE3-208ENST00000614678 CAND2O75155 1236 aa6.32□□□□□ -1.4
CPNE3-208ENST00000614678 LYPLA2O95372 231 aa6.32□□□□□ -1.4
CPNE3-208ENST00000614678 PHKA2P46019 1235 aa6.32□□□□□ -1.4
CPNE3-208ENST00000614678 SLC12A3P55017 1021 aa6.32□□□□□ -1.4
CPNE3-208ENST00000614678 PTENP60484 403 aa6.32□□□□□ -1.4
CPNE3-208ENST00000614678 ERVK-21P61565 698 aa6.32□□□□□ -1.4
CPNE3-208ENST00000614678 SKIV2LQ15477 1246 aaKnown RBP6.32□□□□□ -1.4
CPNE3-208ENST00000614678 GLRA4Q5JXX5 417 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms