RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 CLASP2O75122 1294 aaKnown RBP13.98□□□□□ -0.17
UPF1-203ENST00000594504 CXCL14O95715 111 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 PHKA2P46019 1235 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 DNM2P50570 870 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 FOSBP53539 338 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 PSMC5P62195 406 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 EARS2Q5JPH6 523 aaKnown RBP13.98□□□□□ -0.17
UPF1-203ENST00000594504 IER5LQ5T953 404 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 TWF2Q6IBS0 349 aaKnown RBP13.98□□□□□ -0.17
UPF1-203ENST00000594504 MOXD1Q6UVY6 613 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 TMEM173Q86WV6 379 aaPredicted RBP13.98□□□□□ -0.17
UPF1-203ENST00000594504 ZNF710Q8N1W2 664 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 MRPL43Q8N983 215 aaKnown RBP13.98□□□□□ -0.17
UPF1-203ENST00000594504 FEZF2Q8TBJ5 459 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 PBXIP1Q96AQ6 731 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 MFSD14AQ96MC6 490 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 NLRP4Q96MN2 994 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 NRDE2Q9H7Z3 1164 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 CHST12Q9NRB3 414 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 PIN4Q9Y237 131 aaKnown RBP13.98□□□□□ -0.17
UPF1-203ENST00000594504 INPP5FQ9Y2H2 1132 aa13.98□□□□□ -0.17
UPF1-203ENST00000594504 ZBTB39O15060 712 aa13.97□□□□□ -0.17
UPF1-203ENST00000594504 ZC3H11AO75152 810 aaKnown RBP eCLIP13.97□□□□□ -0.17
UPF1-203ENST00000594504 WEE2P0C1S8 567 aa13.97□□□□□ -0.17
UPF1-203ENST00000594504 PPM1AP35813 382 aa13.97□□□□□ -0.17
UPF1-203ENST00000594504 ALDH7A1P49419 539 aaKnown RBP13.97□□□□□ -0.17
UPF1-203ENST00000594504 NHLH1Q02575 133 aa13.97□□□□□ -0.17
UPF1-203ENST00000594504 SMC1AQ14683 1233 aaKnown RBP13.97□□□□□ -0.17
UPF1-203ENST00000594504 SAFBQ15424 915 aaKnown RBP eCLIP13.97□□□□□ -0.17
UPF1-203ENST00000594504 PIK3AP1Q6ZUJ8 805 aa13.97□□□□□ -0.17
UPF1-203ENST00000594504 CATSPER4Q7RTX7 472 aa13.97□□□□□ -0.17
UPF1-203ENST00000594504 DIS3L2Q8IYB7 885 aaKnown RBP13.97□□□□□ -0.17
UPF1-203ENST00000594504 C12orf76Q8N812 135 aaPredicted RBP13.97□□□□□ -0.17
UPF1-203ENST00000594504 FBXO18Q8NFZ0 1043 aa13.97□□□□□ -0.17
UPF1-203ENST00000594504 BCL7CQ8WUZ0 217 aaPredicted RBP13.97□□□□□ -0.17
UPF1-203ENST00000594504 HAS1Q92839 578 aa13.97□□□□□ -0.17
UPF1-203ENST00000594504 TNFRSF25Q93038 417 aa13.97□□□□□ -0.17
UPF1-203ENST00000594504 TMEM143Q96AN5 459 aa13.97□□□□□ -0.17
UPF1-203ENST00000594504 IFT122Q9HBG6 1241 aa13.97□□□□□ -0.17
UPF1-203ENST00000594504 CYP26B1Q9NR63 512 aa13.97□□□□□ -0.17
UPF1-203ENST00000594504 FAM105AQ9NUU6 356 aa13.97□□□□□ -0.17
UPF1-203ENST00000594504 VAV3Q9UKW4 847 aa13.97□□□□□ -0.17
UPF1-203ENST00000594504 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.97□□□□□ -0.17
UPF1-203ENST00000594504 HCFC2Q9Y5Z7 792 aa13.97□□□□□ -0.17
UPF1-203ENST00000594504 BDP1A6H8Y1 2624 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 TECTAO75443 2155 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 FAM205CA6NFA0 338 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 BTBD18B2RXH4 712 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 B4GALT3O60512 393 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 CCNT1O60563 726 aaKnown RBP13.96□□□□□ -0.17
UPF1-203ENST00000594504 OFD1O75665 1012 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 GALTP07902 379 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 SRGAP2CP0DJJ0 459 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 SRGAP2BP0DMP2 458 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 SFPQP23246 707 aaKnown RBP eCLIP13.96□□□□□ -0.17
UPF1-203ENST00000594504 QARSP47897 775 aaKnown RBP13.96□□□□□ -0.17
UPF1-203ENST00000594504 AFF1P51825 1210 aaKnown RBP13.96□□□□□ -0.17
UPF1-203ENST00000594504 CDC42EP1Q00587 391 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 NR5A1Q13285 461 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 PPP2R5CQ13362 524 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 CUL4AQ13619 759 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 BMP8AQ7Z5Y6 402 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 NEK8Q86SG6 692 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 ZNF410Q86VK4 478 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 ZNF280BQ86YH2 543 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 VPS52Q8N1B4 723 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 CEP170P1Q96L14 293 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 PHOX2BQ99453 314 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 INO80BQ9C086 356 aaPredicted RBP13.96□□□□□ -0.17
UPF1-203ENST00000594504 GBP3Q9H0R5 595 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 MINDY3Q9H8M7 445 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 KCNMB3Q9NPA1 279 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 TBC1D13Q9NVG8 400 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 RGL1Q9NZL6 768 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 DNAJB4Q9UDY4 337 aa13.96□□□□□ -0.17
UPF1-203ENST00000594504 C5orf42Q9H799 3197 aa13.95□□□□□ -0.18
UPF1-203ENST00000594504 GCFC2P16383 781 aaKnown RBP13.95□□□□□ -0.18
UPF1-203ENST00000594504 MRE11P49959 708 aa13.95□□□□□ -0.18
UPF1-203ENST00000594504 GUCY1B3Q02153 619 aa13.95□□□□□ -0.18
UPF1-203ENST00000594504 CTTNQ14247 550 aaKnown RBP13.95□□□□□ -0.18
UPF1-203ENST00000594504 NOMO2Q5JPE7 1267 aa13.95□□□□□ -0.18
UPF1-203ENST00000594504 NCAPH2Q6IBW4 605 aa13.95□□□□□ -0.18
UPF1-203ENST00000594504 POTEDQ86YR6 584 aa13.95□□□□□ -0.18
UPF1-203ENST00000594504 PRSS33Q8NF86 280 aa13.95□□□□□ -0.18
UPF1-203ENST00000594504 PRPF31Q8WWY3 499 aaKnown RBP13.95□□□□□ -0.18
UPF1-203ENST00000594504 CASP10Q92851 521 aa13.95□□□□□ -0.18
UPF1-203ENST00000594504 TMEM169Q96HH4 297 aa13.95□□□□□ -0.18
UPF1-203ENST00000594504 DYDC2Q96IM9 177 aa13.95□□□□□ -0.18
UPF1-203ENST00000594504 NAP1L4Q99733 375 aaKnown RBP13.95□□□□□ -0.18
UPF1-203ENST00000594504 TRAIPQ9BWF2 469 aa13.95□□□□□ -0.18
UPF1-203ENST00000594504 MRPL9Q9BYD2 267 aaKnown RBP13.95□□□□□ -0.18
UPF1-203ENST00000594504 ZBP1Q9H171 429 aa13.95□□□□□ -0.18
UPF1-203ENST00000594504 POMKQ9H5K3 350 aa13.95□□□□□ -0.18
UPF1-203ENST00000594504 TSHZ2Q9NRE2 1034 aa13.95□□□□□ -0.18
UPF1-203ENST00000594504 SMC3Q9UQE7 1217 aa13.95□□□□□ -0.18
UPF1-203ENST00000594504 COL4A3BPQ9Y5P4 624 aa13.95□□□□□ -0.18
UPF1-203ENST00000594504 FSD2A1L4K1 749 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 K7ELQ4 463 aaPredicted RBP13.94□□□□□ -0.18
UPF1-203ENST00000594504 MARCH6O60337 910 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 DDHD2O94830 711 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms