RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 KSR1Q8IVT5 923 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 ZNF579Q8NAF0 562 aaKnown RBP13.18□□□□□ -0.3
CLIP3-204ENST00000590559 SLC22A17Q8WUG5 538 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 LPPQ93052 612 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 IGSF21Q96ID5 467 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 PRRX2Q99811 253 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 PHF20Q9BVI0 1012 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 APOL5Q9BWW9 433 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 INO80BQ9C086 356 aaPredicted RBP13.18□□□□□ -0.3
CLIP3-204ENST00000590559 DHX33Q9H6R0 707 aaKnown RBP13.18□□□□□ -0.3
CLIP3-204ENST00000590559 CYP26B1Q9NR63 512 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 CYP46A1Q9Y6A2 500 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 DCHS1Q96JQ0 3298 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 TDRD15B5MCY1 1934 aaKnown RBP13.17□□□□□ -0.3
CLIP3-204ENST00000590559 CARNS1A5YM72 827 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 DDX11L8A8MPP1 907 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 C2CD4DB7Z1M9 353 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 CXCL14O95715 111 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 SKIP12755 728 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 HOXA11P31270 313 aaPredicted RBP13.17□□□□□ -0.3
CLIP3-204ENST00000590559 RAB27AP51159 221 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 PTPN5P54829 565 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 VCPP55072 806 aaKnown RBP13.17□□□□□ -0.3
CLIP3-204ENST00000590559 SPIRE1Q08AE8 756 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 NONOQ15233 471 aaKnown RBP eCLIP13.17□□□□□ -0.3
CLIP3-204ENST00000590559 INF2Q27J81 1249 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 AGMOQ6ZNB7 445 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 KRT25Q7Z3Z0 450 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 RHPN2Q8IUC4 686 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 VPS52Q8N1B4 723 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 HAS1Q92839 578 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 TMEM169Q96HH4 297 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 FAM20AQ96MK3 541 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 SCLT1Q96NL6 688 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 NECTIN4Q96NY8 510 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 LARP6Q9BRS8 491 aaKnown RBP13.17□□□□□ -0.3
CLIP3-204ENST00000590559 MINDY3Q9H8M7 445 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 AGPAT5Q9NUQ2 364 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 DNAJB4Q9UDY4 337 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 DDX25Q9UHL0 483 aaKnown RBP13.17□□□□□ -0.3
CLIP3-204ENST00000590559 PIN4Q9Y237 131 aaKnown RBP13.17□□□□□ -0.3
CLIP3-204ENST00000590559 NR2E1Q9Y466 385 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 PPME1Q9Y570 386 aa13.17□□□□□ -0.3
CLIP3-204ENST00000590559 MTCL1Q9Y4B5 1905 aaKnown RBP13.17□□□□□ -0.3
CLIP3-204ENST00000590559 LILRB3O75022 631 aa13.16□□□□□ -0.3
CLIP3-204ENST00000590559 ZC3H11AO75152 810 aaKnown RBP eCLIP13.16□□□□□ -0.3
CLIP3-204ENST00000590559 EFEMP2O95967 443 aa13.16□□□□□ -0.3
CLIP3-204ENST00000590559 EPCAMP16422 314 aa13.16□□□□□ -0.3
CLIP3-204ENST00000590559 AVPR2P30518 371 aa13.16□□□□□ -0.3
CLIP3-204ENST00000590559 QARSP47897 775 aaKnown RBP13.16□□□□□ -0.3
CLIP3-204ENST00000590559 NPEPPSP55786 919 aa13.16□□□□□ -0.3
CLIP3-204ENST00000590559 GIT2Q14161 759 aa13.16□□□□□ -0.3
CLIP3-204ENST00000590559 NOMO2Q5JPE7 1267 aa13.16□□□□□ -0.3
CLIP3-204ENST00000590559 UBXN11Q5T124 520 aa13.16□□□□□ -0.3
CLIP3-204ENST00000590559 PLA2G4FQ68DD2 849 aa13.16□□□□□ -0.3
CLIP3-204ENST00000590559 TWF2Q6IBS0 349 aaKnown RBP13.16□□□□□ -0.3
CLIP3-204ENST00000590559 KIAA1841Q6NSI8 718 aa13.16□□□□□ -0.3
CLIP3-204ENST00000590559 ZNF280BQ86YH2 543 aa13.16□□□□□ -0.3
CLIP3-204ENST00000590559 SUGP1Q8IWZ8 645 aaKnown RBP13.16□□□□□ -0.3
CLIP3-204ENST00000590559 FEZF2Q8TBJ5 459 aa13.16□□□□□ -0.3
CLIP3-204ENST00000590559 AUTS2Q8WXX7 1259 aa13.16□□□□□ -0.3
CLIP3-204ENST00000590559 RIPOR3Q96MK2 946 aa13.16□□□□□ -0.3
CLIP3-204ENST00000590559 JPH2Q9BR39 696 aaPredicted RBP13.16□□□□□ -0.3
CLIP3-204ENST00000590559 KCNJ14Q9UNX9 436 aa13.16□□□□□ -0.3
CLIP3-204ENST00000590559 COL4A3BPQ9Y5P4 624 aa13.16□□□□□ -0.3
CLIP3-204ENST00000590559 ZFHX2Q9C0A1 2572 aaPredicted RBP13.15□□□□□ -0.3
CLIP3-204ENST00000590559 CPLX1O14810 134 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 TBX3O15119 743 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 DDHD2O94830 711 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 BRD1O95696 1058 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 PDGFBP01127 241 aaPredicted RBP13.15□□□□□ -0.3
CLIP3-204ENST00000590559 P4HBP07237 508 aaKnown RBP13.15□□□□□ -0.3
CLIP3-204ENST00000590559 MTHFRP42898 656 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 SLC11A1P49279 550 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 AFF1P51825 1210 aaKnown RBP13.15□□□□□ -0.3
CLIP3-204ENST00000590559 SCRN1Q12765 414 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 PTPN14Q15678 1187 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 CES5AQ6NT32 575 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 GLB1LQ6UWU2 654 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 CATSPER4Q7RTX7 472 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 SRGAP1Q7Z6B7 1085 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 C4orf19Q8IY42 314 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 UBALD2Q8IYN6 164 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 ZDHHC14Q8IZN3 488 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 KREMEN2Q8NCW0 462 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 PRPF31Q8WWY3 499 aaKnown RBP13.15□□□□□ -0.3
CLIP3-204ENST00000590559 DZANK1Q9NVP4 752 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 SORCS3Q9UPU3 1222 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 USTQ9Y2C2 406 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 PCDHB2Q9Y5E7 798 aa13.15□□□□□ -0.3
CLIP3-204ENST00000590559 STK36Q9NRP7 1315 aa13.14□□□□□ -0.31
CLIP3-204ENST00000590559 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.14□□□□□ -0.31
CLIP3-204ENST00000590559 INPPL1O15357 1258 aa13.14□□□□□ -0.31
CLIP3-204ENST00000590559 GCFC2P16383 781 aaKnown RBP13.14□□□□□ -0.31
CLIP3-204ENST00000590559 SP100P23497 879 aaPredicted RBP13.14□□□□□ -0.31
CLIP3-204ENST00000590559 NUBP1P53384 320 aa13.14□□□□□ -0.31
CLIP3-204ENST00000590559 STK3Q13188 491 aa13.14□□□□□ -0.31
CLIP3-204ENST00000590559 EPHA7Q15375 998 aa13.14□□□□□ -0.31
CLIP3-204ENST00000590559 LETM2Q2VYF4 491 aa13.14□□□□□ -0.31
CLIP3-204ENST00000590559 LONRF3Q496Y0 759 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms