RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 SIX2Q9NPC8 291 aa12.28□□□□□ -0.44
LIG3-204ENST00000585740 KMT5AQ9NQR1 393 aa12.28□□□□□ -0.44
LIG3-204ENST00000585740 BTBD7Q9P203 1132 aa12.28□□□□□ -0.44
LIG3-204ENST00000585740 TRIM10Q9UDY6 481 aa12.28□□□□□ -0.44
LIG3-204ENST00000585740 JRKLQ9Y4A0 524 aa12.28□□□□□ -0.44
LIG3-204ENST00000585740 FHOD1Q9Y613 1164 aa12.28□□□□□ -0.44
LIG3-204ENST00000585740 SAR1BQ9Y6B6 198 aa12.28□□□□□ -0.44
LIG3-204ENST00000585740 TLL2Q9Y6L7 1015 aa12.28□□□□□ -0.44
LIG3-204ENST00000585740 LRRC37A2A6NM11 1700 aa12.28□□□□□ -0.44
LIG3-204ENST00000585740 CCDC169A6NNP5 214 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 BTNL10A8MVZ5 291 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 SLC16A4O15374 487 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 CA12O43570 354 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 STBD1O95210 358 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 ABL1P00519 1130 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 H2AFXP16104 143 aaPredicted RBP12.27□□□□□ -0.45
LIG3-204ENST00000585740 PRLRP16471 622 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 VAMP7P51809 220 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 NPEPPSP55786 919 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 JAM2P57087 298 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 PRKCEQ02156 737 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 IFI16Q16666 785 aaKnown RBP12.27□□□□□ -0.45
LIG3-204ENST00000585740 TEX35Q5T0J7 233 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 FAM160B1Q5W0V3 765 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 IQCEQ6IPM2 695 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 NCAPG2Q86XI2 1143 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 MAP4K3Q8IVH8 894 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 KSR1Q8IVT5 923 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 FAM133AQ8N9E0 248 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 LRRN4CLQ8ND94 238 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 TMEM161BQ8NDZ6 487 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 OTUD5Q96G74 571 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 NOX5Q96PH1 765 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 CCDC94Q9BW85 323 aaPredicted RBP12.27□□□□□ -0.45
LIG3-204ENST00000585740 STK33Q9BYT3 514 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 ASCC2Q9H1I8 757 aaPredicted RBP12.27□□□□□ -0.45
LIG3-204ENST00000585740 ZNF302Q9NR11 478 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 PDLIM7Q9NR12 457 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 CYP26B1Q9NR63 512 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 HSPBP1Q9NZL4 362 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 SEPT9Q9UHD8 586 aaPredicted RBP12.27□□□□□ -0.45
LIG3-204ENST00000585740 TBX20Q9UMR3 447 aa12.27□□□□□ -0.45
LIG3-204ENST00000585740 ZNFX1Q9P2E3 1918 aaKnown RBP12.27□□□□□ -0.45
LIG3-204ENST00000585740 RCCD1A6NED2 376 aa12.26□□□□□ -0.45
LIG3-204ENST00000585740 KIAA0391O15091 583 aaKnown RBP12.26□□□□□ -0.45
LIG3-204ENST00000585740 ZNF862O60290 1169 aa12.26□□□□□ -0.45
LIG3-204ENST00000585740 ACTN1P12814 892 aa12.26□□□□□ -0.45
LIG3-204ENST00000585740 GARTP22102 1010 aa12.26□□□□□ -0.45
LIG3-204ENST00000585740 RFC5P40937 340 aa12.26□□□□□ -0.45
LIG3-204ENST00000585740 NPTX2P47972 431 aa12.26□□□□□ -0.45
LIG3-204ENST00000585740 IRF2BP2Q7Z5L9 587 aa12.26□□□□□ -0.45
LIG3-204ENST00000585740 CCDC60Q8IWA6 550 aaPredicted RBP12.26□□□□□ -0.45
LIG3-204ENST00000585740 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.26□□□□□ -0.45
LIG3-204ENST00000585740 INTS2Q9H0H0 1204 aaKnown RBP12.26□□□□□ -0.45
LIG3-204ENST00000585740 NRBP2Q9NSY0 501 aa12.26□□□□□ -0.45
LIG3-204ENST00000585740 PNMA3Q9UL41 463 aa12.26□□□□□ -0.45
LIG3-204ENST00000585740 INTUQ9ULD6 942 aa12.26□□□□□ -0.45
LIG3-204ENST00000585740 USP20Q9Y2K6 914 aa12.26□□□□□ -0.45
LIG3-204ENST00000585740 MAFBQ9Y5Q3 323 aaPredicted RBP12.26□□□□□ -0.45
LIG3-204ENST00000585740 SIP14410 1827 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 IGKV6D-21A0A0A0MT36 114 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 MACROD2A1Z1Q3 448 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 DENND3A2RUS2 1198 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 ATP8B1O43520 1251 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 CNMDO75829 334 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 OATP04181 439 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 TCP1P17987 556 aaKnown RBP12.25□□□□□ -0.45
LIG3-204ENST00000585740 SOX5P35711 763 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 CNTN2Q02246 1040 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 GFPT1Q06210 699 aaPredicted RBP12.25□□□□□ -0.45
LIG3-204ENST00000585740 BMS1Q14692 1282 aaKnown RBP12.25□□□□□ -0.45
LIG3-204ENST00000585740 FBXO38Q6PIJ6 1188 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 SEPT14Q6ZU15 432 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 EXOC8Q8IYI6 725 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 SHCBP1Q8NEM2 672 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 TMC2Q8TDI7 906 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 CNKSR2Q8WXI2 1034 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 FAM167AQ96KS9 214 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 PAGR1Q9BTK6 254 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 NIFKQ9BYG3 293 aaKnown RBP12.25□□□□□ -0.45
LIG3-204ENST00000585740 MROH8Q9H579 483 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 KIAA1586Q9HCI6 787 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 GPRC5CQ9NQ84 441 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 APEX2Q9UBZ4 518 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 SYNGAP1Q96PV0 1343 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 PDE4DIPQ5VU43 2346 aa12.25□□□□□ -0.45
LIG3-204ENST00000585740 TMEM150BA6NC51 233 aa12.24□□□□□ -0.45
LIG3-204ENST00000585740 SOWAHBA6NEL2 793 aa12.24□□□□□ -0.45
LIG3-204ENST00000585740 CELF2O95319 508 aaKnown RBP12.24□□□□□ -0.45
LIG3-204ENST00000585740 ATP1A1P05023 1023 aaKnown RBP12.24□□□□□ -0.45
LIG3-204ENST00000585740 TRIM49P0CI25 452 aa12.24□□□□□ -0.45
LIG3-204ENST00000585740 TRIM49CP0CI26 452 aa12.24□□□□□ -0.45
LIG3-204ENST00000585740 GTF2H1P32780 548 aa12.24□□□□□ -0.45
LIG3-204ENST00000585740 POLGP54098 1239 aaPredicted RBP12.24□□□□□ -0.45
LIG3-204ENST00000585740 ARID5AQ03989 594 aa12.24□□□□□ -0.45
LIG3-204ENST00000585740 SNAPC2Q13487 334 aa12.24□□□□□ -0.45
LIG3-204ENST00000585740 BRD3Q15059 726 aa12.24□□□□□ -0.45
LIG3-204ENST00000585740 NAB2Q15742 525 aa12.24□□□□□ -0.45
LIG3-204ENST00000585740 CBWD6Q4V339 395 aa12.24□□□□□ -0.45
LIG3-204ENST00000585740 BRDTQ58F21 947 aaPredicted RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms