RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 AGO3Q9H9G7 860 aaKnown RBP17.13■□□□□ 0.33
SS18-216ENST00000580751 LARSQ9P2J5 1176 aaKnown RBP17.13■□□□□ 0.33
SS18-216ENST00000580751 PADI3Q9ULW8 664 aa17.13■□□□□ 0.33
SS18-216ENST00000580751 NOC2LQ9Y3T9 749 aaKnown RBP17.13■□□□□ 0.33
SS18-216ENST00000580751 NPHP3-ACAD11A0A0J9YXS1 232 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 MYMKA6NI61 221 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 FAM13AO94988 1023 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 PLS3P13797 630 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 ZNF131P52739 623 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 CACNB1Q02641 598 aaPredicted RBP17.12■□□□□ 0.33
SS18-216ENST00000580751 GIT2Q14161 759 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 IKBKEQ14164 716 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 TMEM240Q5SV17 173 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 CDCA2Q69YH5 1023 aaPredicted RBP17.12■□□□□ 0.33
SS18-216ENST00000580751 CNNM4Q6P4Q7 775 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 CHRDL2Q6WN34 429 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 ZNF365Q70YC5 407 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 FAM228AQ86W67 206 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 BSNDQ8WZ55 320 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 FTHL17Q9BXU8 183 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 GTPBP4Q9BZE4 634 aaKnown RBP17.12■□□□□ 0.33
SS18-216ENST00000580751 OSBPL7Q9BZF2 842 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 PARVGQ9HBI0 331 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 SERTAD1Q9UHV2 236 aa17.12■□□□□ 0.33
SS18-216ENST00000580751 ABHD14A-ACY1A0A1B0GW23 586 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 INO80B-WBP1J3KQ70 363 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 SMC2O95347 1197 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 CAVIN2O95810 425 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 EFNA5P52803 228 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 SMTNP53814 917 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 PEX3P56589 373 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 NFX1Q12986 1120 aaKnown RBP17.11■□□□□ 0.33
SS18-216ENST00000580751 POSTNQ15063 836 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 NT5DC1Q5TFE4 455 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 DYMQ7RTS9 669 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 SPIRE2Q8WWL2 714 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 PAGE5Q96GU1 130 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 TRIM9Q9C026 710 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 POLD4Q9HCU8 107 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 ERVK-5Q9HDB9 667 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 KIAA1468Q9P260 1216 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 ST3GAL5Q9UNP4 418 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 PHLPP2Q6ZVD8 1323 aa17.11■□□□□ 0.33
SS18-216ENST00000580751 MYH11P35749 1972 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 CCDC169A6NNP5 214 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 SFI1A8K8P3 1242 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 H0YCG3 227 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 ERLIN2O94905 339 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 GAP43P17677 238 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 SCP2P22307 547 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 NPTX2P47972 431 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 MBTD1Q05BQ5 628 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 OTOP2Q7RTS6 562 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 CATSPER4Q7RTX7 472 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 MYCT1Q8N699 235 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 TRIML1Q8N9V2 468 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 SPATA20Q8TB22 786 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 HERVK_113Q902F9 699 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 STAMQ92783 540 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 DNAJC19Q96DA6 116 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 PRO3102Q9H379 93 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 ZHX3Q9H4I2 956 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 KMT5AQ9NQR1 393 aa17.1■□□□□ 0.33
SS18-216ENST00000580751 GTPBP6O43824 516 aaPredicted RBP17.09■□□□□ 0.33
SS18-216ENST00000580751 CCDC192P0DO97 292 aa17.09■□□□□ 0.33
SS18-216ENST00000580751 IDEP14735 1019 aa17.09■□□□□ 0.33
SS18-216ENST00000580751 KCNJ6P48051 423 aa17.09■□□□□ 0.33
SS18-216ENST00000580751 NCBP1Q09161 790 aaKnown RBP17.09■□□□□ 0.33
SS18-216ENST00000580751 CAMK4Q16566 473 aa17.09■□□□□ 0.33
SS18-216ENST00000580751 MAPK6Q16659 721 aa17.09■□□□□ 0.33
SS18-216ENST00000580751 SASS6Q6UVJ0 657 aa17.09■□□□□ 0.33
SS18-216ENST00000580751 CCDC65Q8IXS2 484 aa17.09■□□□□ 0.33
SS18-216ENST00000580751 TDHQ8IZJ6 230 aa17.09■□□□□ 0.33
SS18-216ENST00000580751 SLC17A8Q8NDX2 589 aa17.09■□□□□ 0.33
SS18-216ENST00000580751 RNPC3Q96LT9 517 aaKnown RBP17.09■□□□□ 0.33
SS18-216ENST00000580751 PRIMPOLQ96LW4 560 aa17.09■□□□□ 0.33
SS18-216ENST00000580751 GSDMAQ96QA5 445 aa17.09■□□□□ 0.33
SS18-216ENST00000580751 C7orf25Q9BPX7 421 aa17.09■□□□□ 0.33
SS18-216ENST00000580751 NTPCRQ9BSD7 190 aaKnown RBP17.09■□□□□ 0.33
SS18-216ENST00000580751 MINDY3Q9H8M7 445 aa17.09■□□□□ 0.33
SS18-216ENST00000580751 PRMT7Q9NVM4 692 aaPredicted RBP17.09■□□□□ 0.33
SS18-216ENST00000580751 ARHGAP28Q9P2N2 729 aa17.09■□□□□ 0.33
SS18-216ENST00000580751 SEL1LQ9UBV2 794 aa17.09■□□□□ 0.33
SS18-216ENST00000580751 TRIOBPQ9H2D6 2365 aa17.08■□□□□ 0.33
SS18-216ENST00000580751 ADGRA3Q8IWK6 1321 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 A0A1W2PPC1 479 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 FRMD3A2A2Y4 597 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 ZBBXA8MT70 800 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 CSDE1O75534 798 aaKnown RBP17.08■□□□□ 0.32
SS18-216ENST00000580751 ZSCAN20P17040 1043 aaPredicted RBP17.08■□□□□ 0.32
SS18-216ENST00000580751 FGFR4P22455 802 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 ABCD1P33897 745 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 AFMP43652 599 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 ASIC1P78348 528 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 SHHQ15465 462 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 TCTN1Q2MV58 587 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 C9orf50Q5SZB4 431 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 LRSAM1Q6UWE0 723 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 PPP4R3CPQ6ZMV5 832 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 FAM178BQ8IXR5 827 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms