RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 TMEM59LQ9UK28 342 aa11.38□□□□□ -0.59
TOP3A-209ENST00000580095 USP20Q9Y2K6 914 aa11.38□□□□□ -0.59
TOP3A-209ENST00000580095 ZHX2Q9Y6X8 837 aa11.38□□□□□ -0.59
TOP3A-209ENST00000580095 GRIN2DO15399 1336 aa11.38□□□□□ -0.59
TOP3A-209ENST00000580095 PLSCR1O15162 318 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 EIF3DO15371 548 aaKnown RBP eCLIP11.37□□□□□ -0.59
TOP3A-209ENST00000580095 SLC16A4O15374 487 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 PPFIA4O75335 1185 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 ZBTB48P10074 688 aaPredicted RBP11.37□□□□□ -0.59
TOP3A-209ENST00000580095 FERP16591 822 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 MARCKSL1P49006 195 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 BFSP1Q12934 665 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 ALS2CLQ60I27 953 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 MCTP2Q6DN12 878 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 SLC30A5Q8TAD4 765 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 PLEKHO2Q8TD55 490 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 SCFD2Q8WU76 684 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 FAM151AQ8WW52 585 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 STK33Q9BYT3 514 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 TAF1DQ9H5J8 278 aaPredicted RBP11.37□□□□□ -0.59
TOP3A-209ENST00000580095 APEX2Q9UBZ4 518 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 TELO2Q9Y4R8 837 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 GOLGA8KD6RF30 607 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 NPM3O75607 178 aaKnown RBP11.37□□□□□ -0.59
TOP3A-209ENST00000580095 TNFAIP3P21580 790 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 SEC24CP53992 1094 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 FKBP1AP62942 108 aaKnown RBP11.37□□□□□ -0.59
TOP3A-209ENST00000580095 GPATCH11Q8N954 259 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 UBLCP1Q8WVY7 318 aaPredicted RBP11.37□□□□□ -0.59
TOP3A-209ENST00000580095 CTNNBL1Q8WYA6 563 aaPredicted RBP11.37□□□□□ -0.59
TOP3A-209ENST00000580095 SAAL1Q96ER3 474 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 BTBD6Q96KE9 485 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 MXRA8Q9BRK3 442 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 NENFQ9UMX5 172 aa11.37□□□□□ -0.59
TOP3A-209ENST00000580095 ATP9AO75110 1047 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 RPS6KA5O75582 802 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 HSD17B3P37058 310 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 CAP2P40123 477 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 PEX3P56589 373 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 EN1Q05925 392 aaPredicted RBP11.36□□□□□ -0.59
TOP3A-209ENST00000580095 UAP1Q16222 522 aaPredicted RBP11.36□□□□□ -0.59
TOP3A-209ENST00000580095 PHLDB2Q86SQ0 1253 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 ALG3Q92685 438 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 ERVK-5Q9HDB9 667 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 DMAC2Q9NW81 257 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 SLC26A4O43511 780 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 ZNF131P52739 623 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 MRPS9P82933 396 aaKnown RBP11.36□□□□□ -0.59
TOP3A-209ENST00000580095 MAP2K1Q02750 393 aaPredicted RBP11.36□□□□□ -0.59
TOP3A-209ENST00000580095 SF3A3Q12874 501 aaKnown RBP eCLIP11.36□□□□□ -0.592e-6■■■■□ 21.4
TOP3A-209ENST00000580095 C10orf76Q5T2E6 689 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 KRT35Q92764 455 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 SGSM3Q96HU1 749 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 WNK4Q96J92 1243 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 TAAR1Q96RJ0 339 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 TOPORSQ9NS56 1045 aaPredicted RBP11.36□□□□□ -0.59
TOP3A-209ENST00000580095 AMFRQ9UKV5 643 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 STXBP5LQ9Y2K9 1186 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 ZNF536O15090 1300 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 DCDC2CA8MYV0 355 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 EIF3HO15372 352 aaKnown RBP eCLIP11.36□□□□□ -0.597e-7■□□□□ 9.9
TOP3A-209ENST00000580095 SHOX2O60902 331 aaPredicted RBP11.36□□□□□ -0.59
TOP3A-209ENST00000580095 FTLP02792 175 aaPredicted RBP11.36□□□□□ -0.59
TOP3A-209ENST00000580095 TNFRSF8P28908 595 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 IFI16Q16666 785 aaKnown RBP11.36□□□□□ -0.59
TOP3A-209ENST00000580095 ACTRT1Q8TDG2 376 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 PBKQ96KB5 322 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 FBXL5Q9UKA1 691 aa11.36□□□□□ -0.59
TOP3A-209ENST00000580095 ASTN2O75129 1339 aaPredicted RBP11.35□□□□□ -0.59
TOP3A-209ENST00000580095 CCDC169A6NNP5 214 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 BTNL10A8MVZ5 291 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 DHX15O43143 795 aaKnown RBP11.35□□□□□ -0.59
TOP3A-209ENST00000580095 SGPL1O95470 568 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 CTNNA1P35221 906 aaKnown RBP11.35□□□□□ -0.59
TOP3A-209ENST00000580095 SLC15A2Q16348 729 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 TKFCQ3LXA3 575 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 SPDYE2Q495Y8 402 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 EPC2Q52LR7 807 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 FAM102BQ5T8I3 360 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 PRAMEF18Q5VWM3 479 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 NSMFQ6X4W1 530 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 CBWD2Q8IUF1 395 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 FLAD1Q8NFF5 587 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 LMO3Q8TAP4 145 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 CTTNBP2NLQ9P2B4 639 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 TESPA1A2RU30 521 aaPredicted RBP11.35□□□□□ -0.59
TOP3A-209ENST00000580095 GTPBP10A4D1E9 387 aaKnown RBP11.35□□□□□ -0.59
TOP3A-209ENST00000580095 KRT13P13646 458 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 RARRES1P49788 294 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 UBAP2Q5T6F2 1119 aaKnown RBP11.35□□□□□ -0.59
TOP3A-209ENST00000580095 SLFN11Q7Z7L1 901 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 PPM1KQ8N3J5 372 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 UHMK1Q8TAS1 419 aaKnown RBP11.35□□□□□ -0.59
TOP3A-209ENST00000580095 CLEC4DQ8WXI8 215 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 RFFLQ8WZ73 363 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 HES6Q96HZ4 224 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 ISCUQ9H1K1 167 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 DONSONQ9NYP3 566 aa11.35□□□□□ -0.59
TOP3A-209ENST00000580095 SUCLA2Q9P2R7 463 aaPredicted RBP11.35□□□□□ -0.59
TOP3A-209ENST00000580095 CYP26A1O43174 497 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms