RNA–Protein interactions for RNA: ENST00000577827.5

PTPRM-205, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 2

Gene PTPRM, Length 4,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-205ENST00000577827 RHOT1Q8IXI2 618 aa11.08□□□□□ -0.63
PTPRM-205ENST00000577827 CASKIN2Q8WXE0 1202 aa11.08□□□□□ -0.63
PTPRM-205ENST00000577827 CDHR1Q96JP9 859 aa11.08□□□□□ -0.63
PTPRM-205ENST00000577827 FAM84BQ96KN1 310 aaPredicted RBP11.08□□□□□ -0.63
PTPRM-205ENST00000577827 NRBP2Q9NSY0 501 aa11.08□□□□□ -0.63
PTPRM-205ENST00000577827 SRRM3A6NNA2 597 aaPredicted RBP11.08□□□□□ -0.64
PTPRM-205ENST00000577827 EYA4O95677 639 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 AP2B1P63010 937 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 SURF1Q15526 300 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 TMEM179Q6ZVK1 233 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 FAM160B2Q86V87 743 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 RIBC1Q8N443 379 aaPredicted RBP11.08□□□□□ -0.64
PTPRM-205ENST00000577827 SLC35G2Q8TBE7 412 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 DRC3Q9H069 523 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 PABPC3Q9H361 631 aaKnown RBP11.08□□□□□ -0.64
PTPRM-205ENST00000577827 SMARCAL1Q9NZC9 954 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 COL15A1P39059 1388 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 MROH2AA6NES4 1674 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 POTEFA5A3E0 1075 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 TBX3O15119 743 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 DNAJC8O75937 253 aaPredicted RBP11.08□□□□□ -0.64
PTPRM-205ENST00000577827 POTEIP0CG38 1075 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 MRPS35P82673 323 aaKnown RBP11.08□□□□□ -0.64
PTPRM-205ENST00000577827 KLC1Q07866 573 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 POTEGQ6S5H5 508 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 POTEEQ6S8J3 1075 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 ATP11CQ8NB49 1132 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 FAM167BQ9BTA0 163 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 KDM4CQ9H3R0 1056 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 NOD2Q9HC29 1040 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 GINM1Q9NU53 330 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 PPARGC1AQ9UBK2 798 aaKnown RBP11.08□□□□□ -0.64
PTPRM-205ENST00000577827 A6NJR5 290 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 TMPRSS15P98073 1019 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 KRT17Q04695 432 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 DARS2Q6PI48 645 aaKnown RBP11.08□□□□□ -0.64
PTPRM-205ENST00000577827 KSR1Q8IVT5 923 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 EIF1ADQ8N9N8 165 aaKnown RBP11.08□□□□□ -0.64
PTPRM-205ENST00000577827 OR2W6PQ8NHA6 318 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 ACTRT1Q8TDG2 376 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 TRIM51Q9BSJ1 452 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 MKNK1Q9BUB5 465 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 CPVLQ9H3G5 476 aa11.08□□□□□ -0.64
PTPRM-205ENST00000577827 FGFR4P22455 802 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 GCLMP48507 274 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 NBPF20Q3BBV1 942 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 SLFN12LQ6IEE8 588 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 BTNL9Q6UXG8 535 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 CYFIP1Q7L576 1253 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 KIAA0825Q8IV33 1275 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 AENQ8WTP8 325 aaKnown RBP11.07□□□□□ -0.64
PTPRM-205ENST00000577827 HPS3Q969F9 1004 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 H0YIN7 160 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 LDHAP00338 332 aaKnown RBP11.07□□□□□ -0.64
PTPRM-205ENST00000577827 CALB1P05937 261 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 PDHA1P08559 390 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 GHRP10912 638 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 KLK7P49862 253 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 NPEPPSP55786 919 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 RPS6KA2Q15349 733 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 IZUMO3Q5VZ72 239 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 KCNV2Q8TDN2 545 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 SLC7A3Q8WY07 619 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 ALKBH8Q96BT7 664 aaKnown RBP11.07□□□□□ -0.64
PTPRM-205ENST00000577827 CEP170P1Q96L14 293 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 MLXIPLQ9NP71 852 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 APEX2Q9UBZ4 518 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 SFI1A8K8P3 1242 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 CCDC22O60826 627 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 GPC4O75487 556 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 TFDP2Q14188 446 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.07□□□□□ -0.64
PTPRM-205ENST00000577827 CENPPQ6IPU0 288 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 HOMEZQ8IX15 550 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 TAB3Q8N5C8 712 aaPredicted RBP11.07□□□□□ -0.64
PTPRM-205ENST00000577827 PIGOQ8TEQ8 1089 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 RNF34Q969K3 372 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 TTC17Q96AE7 1141 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 DTNBP1Q96EV8 351 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 NDE1Q9NXR1 346 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 CES2O00748 559 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 PPP2R5DQ14738 602 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 MEA1Q16626 185 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 KCTD6Q8NC69 237 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 TMEM35BQ8NCS4 154 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 SLC44A5Q8NCS7 719 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 CCDC97Q96F63 343 aaPredicted RBP11.07□□□□□ -0.64
PTPRM-205ENST00000577827 LRGUKQ96M69 825 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 ANKRD27Q96NW4 1050 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 ANKFY1Q9P2R3 1169 aa11.07□□□□□ -0.64
PTPRM-205ENST00000577827 USP17L15C9J2P7 530 aa11.06□□□□□ -0.64
PTPRM-205ENST00000577827 USP17L13C9JLJ4 530 aa11.06□□□□□ -0.64
PTPRM-205ENST00000577827 USP17L11C9JVI0 530 aa11.06□□□□□ -0.64
PTPRM-205ENST00000577827 USP17L18D6R9N7 530 aa11.06□□□□□ -0.64
PTPRM-205ENST00000577827 USP17L22D6RA61 530 aa11.06□□□□□ -0.64
PTPRM-205ENST00000577827 USP17L17D6RBQ6 530 aa11.06□□□□□ -0.64
PTPRM-205ENST00000577827 USP17L19D6RCP7 530 aa11.06□□□□□ -0.64
PTPRM-205ENST00000577827 USP17L20D6RJB6 530 aa11.06□□□□□ -0.64
PTPRM-205ENST00000577827 RFC1P35251 1148 aaPredicted RBP11.06□□□□□ -0.64
PTPRM-205ENST00000577827 USP17L24Q0WX57 530 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms