RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 ARHGAP28Q9P2N2 729 aa18.85■□□□□ 0.61
NUP88-210ENST00000574867 SMC2O95347 1197 aa18.85■□□□□ 0.61
NUP88-210ENST00000574867 RPN1P04843 607 aaKnown RBP18.85■□□□□ 0.61
NUP88-210ENST00000574867 FAM43BQ6ZT52 329 aaPredicted RBP18.85■□□□□ 0.61
NUP88-210ENST00000574867 TMEM40Q8WWA1 233 aa18.85■□□□□ 0.61
NUP88-210ENST00000574867 NUP62CLQ9H1M0 184 aa18.85■□□□□ 0.61
NUP88-210ENST00000574867 EXOC1Q9NV70 894 aa18.85■□□□□ 0.61
NUP88-210ENST00000574867 ZMYND8Q9ULU4 1186 aaPredicted RBP18.85■□□□□ 0.61
NUP88-210ENST00000574867 CXCL10P02778 98 aa18.84■□□□□ 0.61
NUP88-210ENST00000574867 PFKMP08237 780 aa18.84■□□□□ 0.61
NUP88-210ENST00000574867 GHRP10912 638 aa18.84■□□□□ 0.61
NUP88-210ENST00000574867 SYN1P17600 705 aa18.84■□□□□ 0.61
NUP88-210ENST00000574867 LPIN1Q14693 890 aa18.84■□□□□ 0.61
NUP88-210ENST00000574867 ST6GALNAC4Q9H4F1 302 aa18.84■□□□□ 0.61
NUP88-210ENST00000574867 ADGRA3Q8IWK6 1321 aa18.84■□□□□ 0.61
NUP88-210ENST00000574867 SCN5AQ14524 2016 aa18.84■□□□□ 0.61
NUP88-210ENST00000574867 INO80B-WBP1J3KQ70 363 aa18.83■□□□□ 0.61
NUP88-210ENST00000574867 K7ENM7 598 aa18.83■□□□□ 0.61
NUP88-210ENST00000574867 SLC16A4O15374 487 aa18.83■□□□□ 0.61
NUP88-210ENST00000574867 KLRC4O43908 158 aa18.83■□□□□ 0.61
NUP88-210ENST00000574867 NBNO60934 754 aa18.83■□□□□ 0.61
NUP88-210ENST00000574867 RPS6KA5O75582 802 aa18.83■□□□□ 0.61
NUP88-210ENST00000574867 EHHADHQ08426 723 aa18.83■□□□□ 0.61
NUP88-210ENST00000574867 PAK2Q13177 524 aa18.83■□□□□ 0.61
NUP88-210ENST00000574867 KCNB1Q14721 858 aa18.83■□□□□ 0.61
NUP88-210ENST00000574867 TMEM161BQ8NDZ6 487 aa18.83■□□□□ 0.61
NUP88-210ENST00000574867 GSDMAQ96QA5 445 aa18.83■□□□□ 0.61
NUP88-210ENST00000574867 FIZ1Q96SL8 496 aa18.83■□□□□ 0.61
NUP88-210ENST00000574867 KIFC3Q9BVG8 833 aa18.83■□□□□ 0.61
NUP88-210ENST00000574867 MRPL44Q9H9J2 332 aaKnown RBP18.83■□□□□ 0.61
NUP88-210ENST00000574867 RMND1Q9NWS8 449 aa18.83■□□□□ 0.61
NUP88-210ENST00000574867 GPR182O15218 404 aa18.83■□□□□ 0.6
NUP88-210ENST00000574867 FPGSQ05932 587 aa18.83■□□□□ 0.6
NUP88-210ENST00000574867 MBTD1Q05BQ5 628 aa18.83■□□□□ 0.6
NUP88-210ENST00000574867 PPIGQ13427 754 aaKnown RBP eCLIP18.83■□□□□ 0.62e-6■□□□□ 8.5
NUP88-210ENST00000574867 ALCAMQ13740 583 aa18.83■□□□□ 0.6
NUP88-210ENST00000574867 FAM26FQ5R3K3 315 aa18.83■□□□□ 0.6
NUP88-210ENST00000574867 SPATA20Q8TB22 786 aa18.83■□□□□ 0.6
NUP88-210ENST00000574867 SMARCE1Q969G3 411 aa18.83■□□□□ 0.6
NUP88-210ENST00000574867 PRIMPOLQ96LW4 560 aa18.83■□□□□ 0.6
NUP88-210ENST00000574867 LBHD1Q9BQE6 289 aaPredicted RBP18.83■□□□□ 0.6
NUP88-210ENST00000574867 TMEM134Q9H6X4 195 aa18.83■□□□□ 0.6
NUP88-210ENST00000574867 PRMT7Q9NVM4 692 aaPredicted RBP18.83■□□□□ 0.6
NUP88-210ENST00000574867 NOC2LQ9Y3T9 749 aaKnown RBP18.83■□□□□ 0.6
NUP88-210ENST00000574867 PSMD2Q13200 908 aa18.82■□□□□ 0.6
NUP88-210ENST00000574867 MAPK6Q16659 721 aa18.82■□□□□ 0.6
NUP88-210ENST00000574867 KMT5BQ4FZB7 885 aa18.82■□□□□ 0.6
NUP88-210ENST00000574867 STXBP4Q6ZWJ1 553 aa18.82■□□□□ 0.6
NUP88-210ENST00000574867 HAUS6Q7Z4H7 955 aa18.82■□□□□ 0.6
NUP88-210ENST00000574867 FAM228AQ86W67 206 aa18.82■□□□□ 0.6
NUP88-210ENST00000574867 RPUSD2Q8IZ73 545 aaKnown RBP18.82■□□□□ 0.6
NUP88-210ENST00000574867 APBB2Q92870 758 aa18.82■□□□□ 0.6
NUP88-210ENST00000574867 BADQ92934 168 aa18.82■□□□□ 0.6
NUP88-210ENST00000574867 HVCN1Q96D96 273 aa18.82■□□□□ 0.6
NUP88-210ENST00000574867 IFIH1Q9BYX4 1025 aaKnown RBP18.82■□□□□ 0.6
NUP88-210ENST00000574867 CCDC113Q9H0I3 377 aa18.82■□□□□ 0.6
NUP88-210ENST00000574867 MINDY3Q9H8M7 445 aa18.82■□□□□ 0.6
NUP88-210ENST00000574867 ERLIN2O94905 339 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 RHOBTB3O94955 611 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 CSF2RAP15509 400 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 GPNMBQ14956 572 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 FAM187BQ17R55 369 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 PLEKHG4Q58EX7 1191 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 PPP4R3CPQ6ZMV5 832 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 PCDHA5Q9Y5H7 936 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 DENND3A2RUS2 1198 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 K7ERI5 159 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 CD52P31358 61 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 CAMK4Q16566 473 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 KLHL40Q2TBA0 621 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 NT5DC1Q5TFE4 455 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 CATSPER4Q7RTX7 472 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 ZNF720Q7Z2F6 126 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 SEPT8Q92599 483 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 GTPBP4Q9BZE4 634 aaKnown RBP18.81■□□□□ 0.6
NUP88-210ENST00000574867 FZD8Q9H461 694 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 AGO3Q9H9G7 860 aaKnown RBP18.81■□□□□ 0.6
NUP88-210ENST00000574867 ERVK-5Q9HDB9 667 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 PADI3Q9ULW8 664 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 ST3GAL5Q9UNP4 418 aa18.81■□□□□ 0.6
NUP88-210ENST00000574867 PRKCBP05771 671 aa18.8■□□□□ 0.6
NUP88-210ENST00000574867 NMT1P30419 496 aaKnown RBP18.8■□□□□ 0.6
NUP88-210ENST00000574867 GTF2BQ00403 316 aa18.8■□□□□ 0.6
NUP88-210ENST00000574867 MLLT1Q03111 559 aaPredicted RBP18.8■□□□□ 0.6
NUP88-210ENST00000574867 STRN3Q13033 797 aa18.8■□□□□ 0.6
NUP88-210ENST00000574867 SKOR2Q2VWA4 1001 aaPredicted RBP18.8■□□□□ 0.6
NUP88-210ENST00000574867 DEFB128Q7Z7B8 93 aa18.8■□□□□ 0.6
NUP88-210ENST00000574867 SYAP1Q96A49 352 aaPredicted RBP18.8■□□□□ 0.6
NUP88-210ENST00000574867 IL23AQ9NPF7 189 aa18.8■□□□□ 0.6
NUP88-210ENST00000574867 TBC1D7Q9P0N9 293 aa18.8■□□□□ 0.6
NUP88-210ENST00000574867 PCDHB13Q9Y5F0 798 aa18.8■□□□□ 0.6
NUP88-210ENST00000574867 CSDE1O75534 798 aaKnown RBP18.8■□□□□ 0.6
NUP88-210ENST00000574867 GCNT3O95395 438 aa18.8■□□□□ 0.6
NUP88-210ENST00000574867 NCBP1Q09161 790 aaKnown RBP18.8■□□□□ 0.6
NUP88-210ENST00000574867 NFKBIBQ15653 356 aa18.8■□□□□ 0.6
NUP88-210ENST00000574867 CNKSR3Q6P9H4 555 aa18.8■□□□□ 0.6
NUP88-210ENST00000574867 FTHL17Q9BXU8 183 aa18.8■□□□□ 0.6
NUP88-210ENST00000574867 OSBPL7Q9BZF2 842 aa18.8■□□□□ 0.6
NUP88-210ENST00000574867 AGPAT5Q9NUQ2 364 aa18.8■□□□□ 0.6
NUP88-210ENST00000574867 UBE4BO95155 1302 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms