RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 KIAA0391O15091 583 aaKnown RBP11.61□□□□□ -0.55
CCDC40-207ENST00000572253 TRIM49P0CI25 452 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 TRIM49CP0CI26 452 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 ITIH4Q14624 930 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 PWP2Q15269 919 aaKnown RBP11.61□□□□□ -0.55
CCDC40-207ENST00000572253 C11orf63Q6NUN7 778 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 HHIPL2Q6UWX4 724 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 FBXO25Q8TCJ0 367 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 MORC4Q8TE76 937 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 CRYGNQ8WXF5 182 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 CCT6BQ92526 530 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 CRAMP1Q96RY5 1269 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 EHMT1Q9H9B1 1298 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 VAV3Q9UKW4 847 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 NR2E1Q9Y466 385 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 CHMP2AO43633 222 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 LRRN2O75325 713 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 GSTA1P08263 222 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 ADRA2BP18089 450 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 COPB2P35606 906 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 KLRC3Q07444 240 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 CALCOCO2Q13137 446 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 XRCC4Q13426 336 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 PPP1R7Q15435 360 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 ZC2HC1CQ53FD0 456 aaPredicted RBP11.61□□□□□ -0.55
CCDC40-207ENST00000572253 ODR4Q5SWX8 454 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 DCAF12L1Q5VU92 463 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 LRCH2Q5VUJ6 765 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 BTNL9Q6UXG8 535 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 CCDC105Q8IYK2 499 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 MAGEC3Q8TD91 643 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 LENG9Q96B70 501 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 ODF2LQ9ULJ1 636 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 PASKQ96RG2 1323 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 IGSF9BQ9UPX0 1349 aa11.61□□□□□ -0.55
CCDC40-207ENST00000572253 RASGRF2O14827 1237 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 MMP13P45452 471 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 SNAP25P60880 206 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 KIF22Q14807 665 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 AMIGO3Q86WK7 504 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 CCDC63Q8NA47 563 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 NACC1Q96RE7 527 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 AGPAT3Q9NRZ7 376 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 HOMER3Q9NSC5 361 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 TRPC6Q9Y210 931 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 SHBGP04278 402 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 GPC5P78333 572 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 SLC29A2Q14542 456 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 PAXIP1Q6ZW49 1069 aaPredicted RBP11.6□□□□□ -0.55
CCDC40-207ENST00000572253 DYDC2Q96IM9 177 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 PLVAPQ9BX97 442 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 FTLP02792 175 aaPredicted RBP11.6□□□□□ -0.55
CCDC40-207ENST00000572253 CYP3A4P08684 503 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 HADHBP55084 474 aaKnown RBP11.6□□□□□ -0.55
CCDC40-207ENST00000572253 BFSP1Q12934 665 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 ZSWIM1Q9BR11 485 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 ERVK-5Q9HDB9 667 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 PI4KBQ9UBF8 816 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 F5H6K3 240 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 EML1O00423 815 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 PPEF1O14829 653 aaPredicted RBP11.6□□□□□ -0.55
CCDC40-207ENST00000572253 SPOPO43791 374 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 GAS7O60861 476 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 VCAM1P19320 739 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 ATP5DP30049 168 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 HOXA13P31271 388 aaPredicted RBP11.6□□□□□ -0.55
CCDC40-207ENST00000572253 MESDQ14696 234 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 CBWD6Q4V339 395 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 CBWD3Q5JTY5 395 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 CBWD5Q5RIA9 395 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 HIBCHQ6NVY1 386 aaPredicted RBP11.6□□□□□ -0.55
CCDC40-207ENST00000572253 CCDC137Q6PK04 289 aaKnown RBP11.6□□□□□ -0.55
CCDC40-207ENST00000572253 TMEM179Q6ZVK1 233 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 C1orf186Q6ZWK4 172 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 ALG3Q92685 438 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 RPS6KC1Q96S38 1066 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 WNT8AQ9H1J5 351 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 UBE2TQ9NPD8 197 aaPredicted RBP11.6□□□□□ -0.55
CCDC40-207ENST00000572253 KCND2Q9NZV8 630 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 PCYOX1Q9UHG3 505 aa11.6□□□□□ -0.55
CCDC40-207ENST00000572253 TPX2Q9ULW0 747 aaKnown RBP11.6□□□□□ -0.55
CCDC40-207ENST00000572253 FRMPD4Q14CM0 1322 aa11.59□□□□□ -0.55
CCDC40-207ENST00000572253 ARHGEF35A5YM69 484 aa11.59□□□□□ -0.55
CCDC40-207ENST00000572253 ZNF720Q7Z2F6 126 aa11.59□□□□□ -0.55
CCDC40-207ENST00000572253 SP8Q8IXZ3 490 aa11.59□□□□□ -0.55
CCDC40-207ENST00000572253 RNF25Q96BH1 459 aaPredicted RBP11.59□□□□□ -0.55
CCDC40-207ENST00000572253 C18orf8Q96DM3 657 aa11.59□□□□□ -0.55
CCDC40-207ENST00000572253 ELAC2Q9BQ52 826 aaKnown RBP11.59□□□□□ -0.55
CCDC40-207ENST00000572253 TMEM109Q9BVC6 243 aa11.59□□□□□ -0.55
CCDC40-207ENST00000572253 TAS2R14Q9NYV8 317 aa11.59□□□□□ -0.55
CCDC40-207ENST00000572253 ARFGEF1Q9Y6D6 1849 aa11.59□□□□□ -0.55
CCDC40-207ENST00000572253 CFAP73A6NFT4 308 aa11.59□□□□□ -0.55
CCDC40-207ENST00000572253 FOXN3O00409 490 aaPredicted RBP11.59□□□□□ -0.55
CCDC40-207ENST00000572253 IBSPP21815 317 aaPredicted RBP11.59□□□□□ -0.55
CCDC40-207ENST00000572253 HOXA10P31260 410 aaPredicted RBP11.59□□□□□ -0.55
CCDC40-207ENST00000572253 PRELPP51888 382 aa11.59□□□□□ -0.55
CCDC40-207ENST00000572253 INTS8Q75QN2 995 aaKnown RBP11.59□□□□□ -0.55
CCDC40-207ENST00000572253 CCDC25Q86WR0 208 aa11.59□□□□□ -0.55
CCDC40-207ENST00000572253 LRRC34Q8IZ02 419 aa11.59□□□□□ -0.55
CCDC40-207ENST00000572253 RDH13Q8NBN7 331 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 146.3 ms