RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 MAN1B1Q9UKM7 699 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 NOD1Q9Y239 953 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 AKT3Q9Y243 479 aa9.34□□□□□ -0.91
SF3B3-212ENST00000568539 TCHHQ07283 1943 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 DCDC2CA8MYV0 355 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 TLR3O15455 904 aaKnown RBP9.33□□□□□ -0.92
SF3B3-212ENST00000568539 CAND2O75155 1236 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 GPR32O75388 356 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 SRGAP2CP0DJJ0 459 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 MAPTP10636 758 aaKnown RBP9.33□□□□□ -0.92
SF3B3-212ENST00000568539 BMP6P22004 513 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 GPC3P51654 580 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 NCKAP1LP55160 1127 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 NLRP11P59045 1033 aaKnown RBP9.33□□□□□ -0.92
SF3B3-212ENST00000568539 CDC42EP1Q00587 391 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 POU5F1BQ06416 359 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 RBL2Q08999 1139 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 TMEM62Q0P6H9 643 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 FAAP100Q0VG06 881 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 STK4Q13043 487 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 PSMD2Q13200 908 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 DMP1Q13316 513 aaPredicted RBP9.33□□□□□ -0.92
SF3B3-212ENST00000568539 MORC3Q14149 939 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 TFDP1Q14186 410 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 PPP2R5AQ15172 486 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 FAM26FQ5R3K3 315 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 RSPH3Q86UC2 560 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 ZNF410Q86VK4 478 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 FAM178BQ8IXR5 827 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 ZNF710Q8N1W2 664 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 RNF149Q8NC42 400 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 CCDC47Q96A33 483 aaKnown RBP9.33□□□□□ -0.92
SF3B3-212ENST00000568539 IFT74Q96LB3 600 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 NLRP4Q96MN2 994 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 FGFBP2Q9BYJ0 223 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 ADAMTS10Q9H324 1103 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 ST6GALNAC4Q9H4F1 302 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 ARHGAP28Q9P2N2 729 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 ATP11BQ9Y2G3 1177 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 SCN10AQ9Y5Y9 1956 aa9.33□□□□□ -0.92
SF3B3-212ENST00000568539 ADGRA3Q8IWK6 1321 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 A0A087WZ62 844 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 LRRIQ4A6NIV6 560 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 CCDC169A6NNP5 214 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 BIN1O00499 593 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 SLC16A4O15374 487 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 LETM1O95202 739 aaPredicted RBP9.32□□□□□ -0.92
SF3B3-212ENST00000568539 CHRNA1P02708 482 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 CKBP12277 381 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 NMT1P30419 496 aaKnown RBP9.32□□□□□ -0.92
SF3B3-212ENST00000568539 THPOP40225 353 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 CASP5P51878 434 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 CRYBB1P53674 252 aaPredicted RBP9.32□□□□□ -0.92
SF3B3-212ENST00000568539 PTENP60484 403 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 MRPS6P82932 125 aaKnown RBP9.32□□□□□ -0.92
SF3B3-212ENST00000568539 MGAT3Q09327 533 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 KIZQ2M2Z5 673 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 ZSCAN23Q3MJ62 389 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 FAM26DQ5JW98 314 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 ZNF618Q5T7W0 954 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 ZNF658Q5TYW1 1059 aaPredicted RBP9.32□□□□□ -0.92
SF3B3-212ENST00000568539 CDCA2Q69YH5 1023 aaPredicted RBP9.32□□□□□ -0.92
SF3B3-212ENST00000568539 ISM2Q6H9L7 571 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 TRAF7Q6Q0C0 670 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 EPM2AIP1Q7L775 607 aaPredicted RBP9.32□□□□□ -0.92
SF3B3-212ENST00000568539 ZNF720Q7Z2F6 126 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 TRIML1Q8N9V2 468 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 KIAA0895Q8NCT3 520 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 TMEM161BQ8NDZ6 487 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 GLIS3Q8NEA6 775 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 DEPTORQ8TB45 409 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 CAGE1Q8TC20 777 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 NLRP7Q8WX94 980 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 KCNN1Q92952 543 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 ZNF668Q96K58 619 aaPredicted RBP9.32□□□□□ -0.92
SF3B3-212ENST00000568539 PPP1R16BQ96T49 567 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 FDXACB1Q9BRP7 624 aaPredicted RBP9.32□□□□□ -0.92
SF3B3-212ENST00000568539 KIFC3Q9BVG8 833 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 STRA6Q9BX79 667 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 NFKBIZQ9BYH8 718 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 CELF4Q9BZC1 486 aaKnown RBP9.32□□□□□ -0.92
SF3B3-212ENST00000568539 MRPL44Q9H9J2 332 aaKnown RBP9.32□□□□□ -0.92
SF3B3-212ENST00000568539 CDHR5Q9HBB8 845 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 IFT122Q9HBG6 1241 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 SLC39A2Q9NP94 309 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 KMT5AQ9NQR1 393 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 TBC1D7Q9P0N9 293 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 KCNG1Q9UIX4 513 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 TBX21Q9UL17 535 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 GDAQ9Y2T3 454 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 TRPV2Q9Y5S1 764 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 VCANP13611 3396 aa9.32□□□□□ -0.92
SF3B3-212ENST00000568539 SYCE3A1L190 88 aa9.31□□□□□ -0.92
SF3B3-212ENST00000568539 DENND3A2RUS2 1198 aa9.31□□□□□ -0.92
SF3B3-212ENST00000568539 GRXCR2A6NFK2 248 aa9.31□□□□□ -0.92
SF3B3-212ENST00000568539 H0YCG3 227 aa9.31□□□□□ -0.92
SF3B3-212ENST00000568539 K7ENM7 598 aa9.31□□□□□ -0.92
SF3B3-212ENST00000568539 M0QZ92 97 aa9.31□□□□□ -0.92
SF3B3-212ENST00000568539 GCNT3O95395 438 aa9.31□□□□□ -0.92
SF3B3-212ENST00000568539 CLTBP09497 229 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms