RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SPICE1Q8N0Z3 855 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 C3orf20Q8ND61 904 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 FAM129AQ9BZQ8 928 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 TTC7AQ9ULT0 858 aaPredicted RBP14.28□□□□□ -0.12
CLN3-210ENST00000563874 PTPN22Q9Y2R2 807 aa14.28□□□□□ -0.12
CLN3-210ENST00000563874 EP400Q96L91 3159 aa14.27□□□□□ -0.12
CLN3-210ENST00000563874 SREBF1P36956 1147 aa14.27□□□□□ -0.12
CLN3-210ENST00000563874 EIF3BP55884 814 aaKnown RBP14.27□□□□□ -0.12
CLN3-210ENST00000563874 MAPK7Q13164 816 aa14.27□□□□□ -0.12
CLN3-210ENST00000563874 SNCBQ16143 134 aa14.27□□□□□ -0.12
CLN3-210ENST00000563874 CERKLQ49MI3 558 aaPredicted RBP14.27□□□□□ -0.12
CLN3-210ENST00000563874 APOBEC3HQ6NTF7 200 aaKnown RBP14.27□□□□□ -0.12
CLN3-210ENST00000563874 MOXD1Q6UVY6 613 aa14.27□□□□□ -0.12
CLN3-210ENST00000563874 MAEAQ7L5Y9 396 aa14.27□□□□□ -0.12
CLN3-210ENST00000563874 SIAH1Q8IUQ4 282 aa14.27□□□□□ -0.12
CLN3-210ENST00000563874 ZDHHC14Q8IZN3 488 aa14.27□□□□□ -0.12
CLN3-210ENST00000563874 BANK1Q8NDB2 785 aa14.27□□□□□ -0.12
CLN3-210ENST00000563874 EPS8L3Q8TE67 593 aaKnown RBP14.27□□□□□ -0.12
CLN3-210ENST00000563874 SGSM3Q96HU1 749 aa14.27□□□□□ -0.12
CLN3-210ENST00000563874 FAM20AQ96MK3 541 aa14.27□□□□□ -0.12
CLN3-210ENST00000563874 OLFML3Q9NRN5 406 aa14.27□□□□□ -0.12
CLN3-210ENST00000563874 APEX2Q9UBZ4 518 aa14.27□□□□□ -0.12
CLN3-210ENST00000563874 TPX2Q9ULW0 747 aaKnown RBP14.27□□□□□ -0.12
CLN3-210ENST00000563874 DDTLA6NHG4 134 aaPredicted RBP14.27□□□□□ -0.13
CLN3-210ENST00000563874 F5H6K3 240 aa14.27□□□□□ -0.13
CLN3-210ENST00000563874 TBX3O15119 743 aa14.27□□□□□ -0.13
CLN3-210ENST00000563874 RGS16O15492 202 aaPredicted RBP14.27□□□□□ -0.13
CLN3-210ENST00000563874 ATMINO43313 823 aaPredicted RBP14.27□□□□□ -0.13
CLN3-210ENST00000563874 BBOX1O75936 387 aa14.27□□□□□ -0.13
CLN3-210ENST00000563874 VCAM1P19320 739 aa14.27□□□□□ -0.13
CLN3-210ENST00000563874 RPL21P46778 160 aaKnown RBP14.27□□□□□ -0.13
CLN3-210ENST00000563874 PRMT1Q99873 361 aaKnown RBP14.27□□□□□ -0.13
CLN3-210ENST00000563874 SYT11Q9BT88 431 aa14.27□□□□□ -0.13
CLN3-210ENST00000563874 ADAM7Q9H2U9 754 aa14.27□□□□□ -0.13
CLN3-210ENST00000563874 CNOT10Q9H9A5 744 aaKnown RBP14.27□□□□□ -0.13
CLN3-210ENST00000563874 PARVGQ9HBI0 331 aa14.27□□□□□ -0.13
CLN3-210ENST00000563874 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.27□□□□□ -0.13
CLN3-210ENST00000563874 FRMD4BQ9Y2L6 1034 aa14.27□□□□□ -0.13
CLN3-210ENST00000563874 RPTORQ8N122 1335 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 TCRBV7S2A1N4TA0A589 114 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 MYL7Q01449 175 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 ICA1Q05084 483 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 TTC27Q6P3X3 843 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 HS2ST1Q7LGA3 356 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 CCDC25Q86WR0 208 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 FAM178BQ8IXR5 827 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 LRRC34Q8IZ02 419 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 ACP6Q9NPH0 428 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 KCNQ5Q9NR82 932 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 AGPAT3Q9NRZ7 376 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 GGT7Q9UJ14 662 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 TISP43B9A030 160 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 SLITRK3O94933 977 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 TRIM37O94972 964 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 FTLP02792 175 aaPredicted RBP14.26□□□□□ -0.13
CLN3-210ENST00000563874 DLG4P78352 724 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 MESDQ14696 234 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 ODR4Q5SWX8 454 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 PRELID2Q8N945 189 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 CCDC197Q8NCU1 140 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 NGLY1Q96IV0 654 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 ZNF317Q96PQ6 595 aaPredicted RBP14.26□□□□□ -0.13
CLN3-210ENST00000563874 NAP1L3Q99457 506 aaPredicted RBP14.26□□□□□ -0.13
CLN3-210ENST00000563874 ELAC2Q9BQ52 826 aaKnown RBP14.26□□□□□ -0.13
CLN3-210ENST00000563874 PCIF1Q9H4Z3 704 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 GRHL1Q9NZI5 618 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 ANKRD62A6NC57 917 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 SLC26A4O43511 780 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 EXOC3O60645 756 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 VIMP08670 466 aaKnown RBP14.26□□□□□ -0.13
CLN3-210ENST00000563874 KCNJ1P48048 391 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 NBPF9Q3BBW0 867 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 C1orf186Q6ZWK4 172 aa14.26□□□□□ -0.13
CLN3-210ENST00000563874 ZC3H12CQ9C0D7 883 aaKnown RBP14.26□□□□□ -0.13
CLN3-210ENST00000563874 UBE2TQ9NPD8 197 aaPredicted RBP14.26□□□□□ -0.13
CLN3-210ENST00000563874 DBR1Q9UK59 544 aaKnown RBP14.26□□□□□ -0.13
CLN3-210ENST00000563874 ANKRD63C9JTQ0 380 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 CCDC172P0C7W6 258 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 RBM5P52756 815 aaKnown RBP eCLIP14.25□□□□□ -0.13
CLN3-210ENST00000563874 PPP1R7Q15435 360 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 FAM133BQ5BKY9 247 aaKnown RBP14.25□□□□□ -0.13
CLN3-210ENST00000563874 HIBCHQ6NVY1 386 aaPredicted RBP14.25□□□□□ -0.13
CLN3-210ENST00000563874 ARMC9Q7Z3E5 817 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 DCAF4Q8WV16 495 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 ATXN2LQ8WWM7 1075 aaKnown RBP14.25□□□□□ -0.13
CLN3-210ENST00000563874 TEKT1Q969V4 418 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 BTBD6Q96KE9 485 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 HSD17B14Q9BPX1 270 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 POLR3CQ9BUI4 534 aaPredicted RBP14.25□□□□□ -0.13
CLN3-210ENST00000563874 WDR18Q9BV38 432 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 LRRC4BQ9NT99 713 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 INTS9Q9NV88 658 aaKnown RBP14.25□□□□□ -0.13
CLN3-210ENST00000563874 WRAP73Q9P2S5 460 aaPredicted RBP14.25□□□□□ -0.13
CLN3-210ENST00000563874 CCDC169A6NNP5 214 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 NDUFB10O96000 172 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 CFBP00751 764 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 NUDT17P0C025 328 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 GYS1P13807 737 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 GAP43P17677 238 aa14.25□□□□□ -0.13
CLN3-210ENST00000563874 PTGIRP43119 386 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms