RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 RFC5P40937 340 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 BCAR1P56945 870 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 DUSP6Q16828 381 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 PDE12Q6L8Q7 609 aaKnown RBP11.42□□□□□ -0.58
LDLR-214ENST00000560628 LLGL2Q6P1M3 1020 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 TMC7Q7Z402 723 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 CCDC83Q8IWF9 413 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 VN1R2Q8NFZ6 395 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 PSPC1Q8WXF1 523 aaKnown RBP11.42□□□□□ -0.58
LDLR-214ENST00000560628 TTC12Q9H892 705 aaPredicted RBP11.42□□□□□ -0.58
LDLR-214ENST00000560628 MINDY3Q9H8M7 445 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 FAM105AQ9NUU6 356 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 LIMCH1Q9UPQ0 1083 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 LZTS1Q9Y250 596 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 INPP5FQ9Y2H2 1132 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 ATG2AQ2TAZ0 1938 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 OFD1O75665 1012 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 EYA4O95677 639 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 SKIP12755 728 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 ALADP13716 330 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 PPM1AP35813 382 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 ALDH7A1P49419 539 aaKnown RBP11.41□□□□□ -0.58
LDLR-214ENST00000560628 COASYQ13057 564 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 EMC2Q15006 297 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 NOMO2Q5JPE7 1267 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 GLB1LQ6UWU2 654 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 EXOC8Q8IYI6 725 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 SLC39A11Q8N1S5 342 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 RNF149Q8NC42 400 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 TCP11Q8WWU5 503 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 HSD17B14Q9BPX1 270 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 TRAIPQ9BWF2 469 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 APOL5Q9BWW9 433 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 TMEM60Q9H2L4 133 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 USP15Q9Y4E8 981 aaPredicted RBP11.41□□□□□ -0.58
LDLR-214ENST00000560628 PCDHB2Q9Y5E7 798 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 BDP1A6H8Y1 2624 aa11.41□□□□□ -0.58
LDLR-214ENST00000560628 PLXNA4Q9HCM2 1894 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 ASAP2O43150 1006 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 DCXO43602 365 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 NEMFO60524 1076 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 ZNF623O75123 536 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 ZC3H11AO75152 810 aaKnown RBP eCLIP11.4□□□□□ -0.58
LDLR-214ENST00000560628 CXCL14O95715 111 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 HOXA11P31270 313 aaPredicted RBP11.4□□□□□ -0.58
LDLR-214ENST00000560628 MCM7P33993 719 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 CA8P35219 290 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 TECP42680 631 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 RNASELQ05823 741 aaKnown RBP11.4□□□□□ -0.58
LDLR-214ENST00000560628 SAFBQ15424 915 aaKnown RBP eCLIP11.4□□□□□ -0.58
LDLR-214ENST00000560628 ZNF174Q15697 407 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 SRGAP1Q7Z6B7 1085 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 FERMT3Q86UX7 667 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 MRPL43Q8N983 215 aaKnown RBP11.4□□□□□ -0.58
LDLR-214ENST00000560628 SMRP1Q8NCR6 262 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 PIGOQ8TEQ8 1089 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 MTMR9Q96QG7 549 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 CDCA3Q99618 268 aaPredicted RBP11.4□□□□□ -0.58
LDLR-214ENST00000560628 MTRQ99707 1265 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 MRPL9Q9BYD2 267 aaKnown RBP11.4□□□□□ -0.58
LDLR-214ENST00000560628 GBP3Q9H0R5 595 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 NRDE2Q9H7Z3 1164 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 NGRNQ9NPE2 291 aaKnown RBP11.4□□□□□ -0.58
LDLR-214ENST00000560628 XPNPEP1Q9NQW7 623 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 AGPAT5Q9NUQ2 364 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 PPME1Q9Y570 386 aa11.4□□□□□ -0.58
LDLR-214ENST00000560628 CENPBP07199 599 aaPredicted RBP11.39□□□□□ -0.59
LDLR-214ENST00000560628 GALTP07902 379 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 RAB27AP51159 221 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 AFF1P51825 1210 aaKnown RBP11.39□□□□□ -0.59
LDLR-214ENST00000560628 UBXN11Q5T124 520 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 AGMOQ6ZNB7 445 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 MAEAQ7L5Y9 396 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 MRPL10Q7Z7H8 261 aaKnown RBP11.39□□□□□ -0.59
LDLR-214ENST00000560628 TMEM173Q86WV6 379 aaPredicted RBP11.39□□□□□ -0.59
LDLR-214ENST00000560628 ZNF280BQ86YH2 543 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 RNF135Q8IUD6 432 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 ASAP3Q8TDY4 903 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 AUTS2Q8WXX7 1259 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 PGBD4Q96DM1 585 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 TMEM169Q96HH4 297 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 CPB2Q96IY4 423 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 C8orf76Q96K31 380 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 RPGRIP1Q96KN7 1286 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 POP1Q99575 1024 aaKnown RBP11.39□□□□□ -0.59
LDLR-214ENST00000560628 ANKEF1Q9NU02 776 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 TBC1D13Q9NVG8 400 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 DNAJB4Q9UDY4 337 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 MUTYHQ9UIF7 546 aa11.39□□□□□ -0.59
LDLR-214ENST00000560628 C2orf71A6NGG8 1288 aa11.38□□□□□ -0.59
LDLR-214ENST00000560628 POTEMA6NI47 508 aa11.38□□□□□ -0.59
LDLR-214ENST00000560628 INO80B-WBP1J3KQ70 363 aa11.38□□□□□ -0.59
LDLR-214ENST00000560628 GAS2O43903 313 aaKnown RBP11.38□□□□□ -0.59
LDLR-214ENST00000560628 B4GALT3O60512 393 aa11.38□□□□□ -0.59
LDLR-214ENST00000560628 CLASP2O75122 1294 aaKnown RBP11.38□□□□□ -0.59
LDLR-214ENST00000560628 DDHD2O94830 711 aa11.38□□□□□ -0.59
LDLR-214ENST00000560628 ERLIN2O94905 339 aa11.38□□□□□ -0.59
LDLR-214ENST00000560628 LYPLA2O95372 231 aa11.38□□□□□ -0.59
LDLR-214ENST00000560628 SLC11A1P49279 550 aa11.38□□□□□ -0.59
LDLR-214ENST00000560628 PTENP60484 403 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms