RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 NKX2-4Q9H2Z4 354 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 KMT5AQ9NQR1 393 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 RGS18Q9NS28 235 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 C1orf112Q9NSG2 853 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 DACT1Q9NYF0 836 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 CHMP5Q9NZZ3 219 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 PCDHB7Q9Y5E2 793 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 TCHHQ07283 1943 aa12.66□□□□□ -0.38
CCDC88C-212ENST00000556767 TBCAO75347 108 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 GJB5O95377 273 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 STAG3L1P0CL83 205 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 DNAJB2P25686 324 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 MBTD1Q05BQ5 628 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 POU5F1BQ06416 359 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 NAALADL2Q58DX5 795 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 ARSHQ5FYA8 562 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 RESP18Q5W5W9 173 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 FAM43BQ6ZT52 329 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 SLC24A5Q71RS6 500 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 DYMQ7RTS9 669 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 IQUBQ8NA54 791 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 TOP1MTQ969P6 601 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 TIFAQ96CG3 184 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 YME1L1Q96TA2 773 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 REEP2Q9BRK0 252 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 SLC28A3Q9HAS3 691 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 CHST12Q9NRB3 414 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 AGPAT5Q9NUQ2 364 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 YBX2Q9Y2T7 364 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 PCDHA11Q9Y5I1 949 aa12.65□□□□□ -0.38
CCDC88C-212ENST00000556767 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 A0A1B0GVL5 298 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 GOLGA6L4A6NEF3 574 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 POLR2DO15514 142 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 TSPAN1O60635 241 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 CA3P07451 260 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 PLS3P13797 630 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 NPTX2P47972 431 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 SARSP49591 514 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 SMTNP53814 917 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 MAPK7Q13164 816 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 GIT2Q14161 759 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 DSC3Q14574 896 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 PCBP1Q15365 356 aaKnown RBP eCLIP12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 MAPK6Q16659 721 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 ZNF697Q5TEC3 545 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 PPP2R2DQ66LE6 453 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 ADALQ6DHV7 355 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 IFNLR1Q8IU57 520 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 NPAS4Q8IUM7 802 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 DAW1Q8N136 415 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 MYCT1Q8N699 235 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 STAMQ92783 540 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 CPB2Q96IY4 423 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 RAD9AQ99638 391 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 NFKBIZQ9BYH8 718 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 C17orf75Q9HAS0 396 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 PRMT7Q9NVM4 692 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 RNF216Q9NWF9 866 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 LARSQ9P2J5 1176 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 KCNG1Q9UIX4 513 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 KCNH3Q9ULD8 1083 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 ODF2LQ9ULJ1 636 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 PTPRSQ13332 1948 aa12.64□□□□□ -0.39
CCDC88C-212ENST00000556767 GBF1Q92538 1859 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 C9IYK1 514 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 K7ERI5 159 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 SLC16A4O15374 487 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 B4GALT5O43286 388 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 PRKCBP05771 671 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 IDEP14735 1019 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 PFKFB1P16118 471 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 CMA1P23946 247 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 EFNA5P52803 228 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 PRPF4BQ13523 1007 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 CDCA2Q69YH5 1023 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 CEP57L1Q8IYX8 460 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 DDX12PQ92771 950 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 FAM161BQ96MY7 647 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 IPO9Q96P70 1041 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 PYM1Q9BRP8 204 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 LRRC27Q9C0I9 530 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 CUEDC2Q9H467 287 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 PARVGQ9HBI0 331 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 INSL6Q9Y581 213 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 MYH11P35749 1972 aa12.63□□□□□ -0.39
CCDC88C-212ENST00000556767 ADGRA3Q8IWK6 1321 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 LCHNA4D1U4 455 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 MYMKA6NI61 221 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 SKIP12755 728 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 ARF4P18085 180 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 AXLP30530 894 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 HOXA11P31270 313 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 RAB27AP51159 221 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 AMPD3Q01432 767 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 STRN3Q13033 797 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 BTG3Q14201 252 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 E2F4Q16254 413 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 LONRF3Q496Y0 759 aa12.62□□□□□ -0.39
CCDC88C-212ENST00000556767 PAN2Q504Q3 1202 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms