RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 CNNM4Q6P4Q7 775 aa15.48■□□□□ 0.07
VIPAS39-208ENST00000556412 CATSPER4Q7RTX7 472 aa15.48■□□□□ 0.07
VIPAS39-208ENST00000556412 SRGAP1Q7Z6B7 1085 aa15.48■□□□□ 0.07
VIPAS39-208ENST00000556412 SPIRE2Q8WWL2 714 aa15.48■□□□□ 0.07
VIPAS39-208ENST00000556412 SMARCE1Q969G3 411 aa15.48■□□□□ 0.07
VIPAS39-208ENST00000556412 IFIH1Q9BYX4 1025 aaKnown RBP15.48■□□□□ 0.07
VIPAS39-208ENST00000556412 NUP62CLQ9H1M0 184 aa15.48■□□□□ 0.07
VIPAS39-208ENST00000556412 CLSTN2Q9H4D0 955 aa15.48■□□□□ 0.07
VIPAS39-208ENST00000556412 PVALEFA0A1B0GWK0 134 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 FRMD3A2A2Y4 597 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 DENND3A2RUS2 1198 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 ERLIN2O94905 339 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 GCNT3O95395 438 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 PARNO95453 639 aaKnown RBP15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 PTMSP20962 102 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 RFC2P35250 354 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 MBTD1Q05BQ5 628 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 GPNMBQ14956 572 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 HAUS6Q7Z4H7 955 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 FAM228AQ86W67 206 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 SEL1LQ9UBV2 794 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 KCNG1Q9UIX4 513 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 PADI3Q9ULW8 664 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 ST3GAL5Q9UNP4 418 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 H0YGN5 161 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 K7ERI5 159 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 GPR182O15218 404 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 KLRC4O43908 158 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 EFNA5P52803 228 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 NCKAP1LP55160 1127 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 POU5F1BQ06416 359 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 PPIGQ13427 754 aaKnown RBP eCLIP15.47■□□□□ 0.078e-7■■■□□ 16.4
VIPAS39-208ENST00000556412 MAPK6Q16659 721 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 ZC2HC1CQ53FD0 456 aaPredicted RBP15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 FAM26FQ5R3K3 315 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 CDCA2Q69YH5 1023 aaPredicted RBP15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 USP38Q8NB14 1042 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 TMEM161BQ8NDZ6 487 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 SLC39A2Q9NP94 309 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 USP20Q9Y2K6 914 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 PCDHA5Q9Y5H7 936 aa15.47■□□□□ 0.07
VIPAS39-208ENST00000556412 H0YCG3 227 aa15.46■□□□□ 0.07
VIPAS39-208ENST00000556412 PRKCBP05771 671 aa15.46■□□□□ 0.07
VIPAS39-208ENST00000556412 MYBP10242 640 aa15.46■□□□□ 0.07
VIPAS39-208ENST00000556412 IBSPP21815 317 aaPredicted RBP15.46■□□□□ 0.07
VIPAS39-208ENST00000556412 STRN3Q13033 797 aa15.46■□□□□ 0.07
VIPAS39-208ENST00000556412 NFKBIBQ15653 356 aa15.46■□□□□ 0.07
VIPAS39-208ENST00000556412 ISM2Q6H9L7 571 aa15.46■□□□□ 0.07
VIPAS39-208ENST00000556412 RPUSD2Q8IZ73 545 aaKnown RBP15.46■□□□□ 0.07
VIPAS39-208ENST00000556412 DBF4BQ8NFT6 615 aa15.46■□□□□ 0.07
VIPAS39-208ENST00000556412 SEPT8Q92599 483 aa15.46■□□□□ 0.07
VIPAS39-208ENST00000556412 NTPCRQ9BSD7 190 aaKnown RBP15.46■□□□□ 0.07
VIPAS39-208ENST00000556412 NFKBIZQ9BYH8 718 aa15.46■□□□□ 0.07
VIPAS39-208ENST00000556412 FGFBP2Q9BYJ0 223 aa15.46■□□□□ 0.07
VIPAS39-208ENST00000556412 OLFML3Q9NRN5 406 aa15.46■□□□□ 0.07
VIPAS39-208ENST00000556412 ARHGAP28Q9P2N2 729 aa15.46■□□□□ 0.07
VIPAS39-208ENST00000556412 ARID2Q68CP9 1835 aa15.46■□□□□ 0.07
VIPAS39-208ENST00000556412 PHLPP2Q6ZVD8 1323 aa15.46■□□□□ 0.06
VIPAS39-208ENST00000556412 BIN1O00499 593 aa15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 B4GALT5O43286 388 aa15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 MAPTP10636 758 aaKnown RBP15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 MAGEA10P43363 369 aaPredicted RBP15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 CASP5P51878 434 aa15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 NCBP1Q09161 790 aaKnown RBP15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 IFNLR1Q8IU57 520 aaPredicted RBP15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 ELOA2Q8IYF1 753 aaPredicted RBP15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 GLIS3Q8NEA6 775 aa15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 BICD1Q96G01 975 aa15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 FIZ1Q96SL8 496 aa15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 ERVK-5Q9HDB9 667 aa15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 IL23AQ9NPF7 189 aa15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 PRMT7Q9NVM4 692 aaPredicted RBP15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 RMND1Q9NWS8 449 aa15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 PIN4Q9Y237 131 aaKnown RBP15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 SQORQ9Y6N5 450 aa15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 PRPF4BQ13523 1007 aaKnown RBP15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 PLEKHG4Q58EX7 1191 aa15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 CAVIN1Q6NZI2 390 aaKnown RBP15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 ZNF720Q7Z2F6 126 aa15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 SLC17A8Q8NDX2 589 aa15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 CPB2Q96IY4 423 aa15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 CCDC113Q9H0I3 377 aa15.45■□□□□ 0.06
VIPAS39-208ENST00000556412 TSPAN1O60635 241 aa15.44■□□□□ 0.06
VIPAS39-208ENST00000556412 CXCL10P02778 98 aa15.44■□□□□ 0.06
VIPAS39-208ENST00000556412 EPHB4P54760 987 aa15.44■□□□□ 0.06
VIPAS39-208ENST00000556412 STXBP4Q6ZWJ1 553 aa15.44■□□□□ 0.06
VIPAS39-208ENST00000556412 CDR2LQ86X02 465 aaPredicted RBP15.44■□□□□ 0.06
VIPAS39-208ENST00000556412 GSDMAQ96QA5 445 aa15.44■□□□□ 0.06
VIPAS39-208ENST00000556412 FZD8Q9H461 694 aa15.44■□□□□ 0.06
VIPAS39-208ENST00000556412 TMEM134Q9H6X4 195 aa15.44■□□□□ 0.06
VIPAS39-208ENST00000556412 TBX20Q9UMR3 447 aa15.44■□□□□ 0.06
VIPAS39-208ENST00000556412 PCDHB13Q9Y5F0 798 aa15.44■□□□□ 0.06
VIPAS39-208ENST00000556412 PRPF6O94906 941 aaKnown RBP15.43■□□□□ 0.06
VIPAS39-208ENST00000556412 RHOBTB3O94955 611 aa15.43■□□□□ 0.06
VIPAS39-208ENST00000556412 PFKMP08237 780 aa15.43■□□□□ 0.06
VIPAS39-208ENST00000556412 ZSCAN20P17040 1043 aaPredicted RBP15.43■□□□□ 0.06
VIPAS39-208ENST00000556412 EHHADHQ08426 723 aa15.43■□□□□ 0.06
VIPAS39-208ENST00000556412 STK4Q13043 487 aa15.43■□□□□ 0.06
VIPAS39-208ENST00000556412 KCNB1Q14721 858 aa15.43■□□□□ 0.06
VIPAS39-208ENST00000556412 TCTN1Q2MV58 587 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms