RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 FGBP02675 491 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 CCDC192P0DO97 292 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 ACRP10323 421 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 KCNA4P22459 653 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 GLRA2P23416 452 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 BMP8BP34820 402 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 NAMPTP43490 491 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 POU5F1BQ06416 359 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 RAD51AP2Q09MP3 1159 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 CAPSQ13938 189 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 MORC3Q14149 939 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 IQCB1Q15051 598 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 PCBP1Q15365 356 aaKnown RBP eCLIP12.04□□□□□ -0.48
SHMT2-218ENST00000555213 ISM2Q6H9L7 571 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 SASS6Q6UVJ0 657 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 CHRDL2Q6WN34 429 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 C11orf57Q6ZUT1 292 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-218ENST00000555213 SRGAP1Q7Z6B7 1085 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 GDF15Q99988 308 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 C7orf25Q9BPX7 421 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 REEP2Q9BRK0 252 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 FDXACB1Q9BRP7 624 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-218ENST00000555213 FTHL17Q9BXU8 183 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 NFKBIZQ9BYH8 718 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 C2orf40Q9H1Z8 148 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 BLZF1Q9H2G9 400 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 ZHX3Q9H4I2 956 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 GRPEL1Q9HAV7 217 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 LARSQ9P2J5 1176 aaKnown RBP12.04□□□□□ -0.48
SHMT2-218ENST00000555213 ABHD14A-ACY1A0A1B0GW23 586 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 CCDC169A6NNP5 214 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 ZBBXA8MT70 800 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 BIN1O00499 593 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 ERLIN2O94905 339 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 PLS3P13797 630 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 SCP2P22307 547 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 CD52P31358 61 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 KCNJ6P48051 423 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 EFNA5P52803 228 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 SMTNP53814 917 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 NCBP1Q09161 790 aaKnown RBP12.03□□□□□ -0.48
SHMT2-218ENST00000555213 NFX1Q12986 1120 aaKnown RBP12.03□□□□□ -0.48
SHMT2-218ENST00000555213 IKBKEQ14164 716 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 ANO6Q4KMQ2 910 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 PLEKHG4Q58EX7 1191 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 ZNF365Q70YC5 407 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 KSR1Q8IVT5 923 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 SLC17A8Q8NDX2 589 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 ZNF668Q96K58 619 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-218ENST00000555213 RNPC3Q96LT9 517 aaKnown RBP12.03□□□□□ -0.48
SHMT2-218ENST00000555213 MED15Q96RN5 788 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 DNAJC25Q9H1X3 360 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 PARVGQ9HBI0 331 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 PADI3Q9ULW8 664 aa12.03□□□□□ -0.48
SHMT2-218ENST00000555213 A0A1W2PPC1 479 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 DENND3A2RUS2 1198 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 MYMKA6NI61 221 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 INO80B-WBP1J3KQ70 363 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 GAP43P17677 238 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 ABCD1P33897 745 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 EPHB4P54760 987 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 PTENP60484 403 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 DPCR1Q3MIW9 517 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 ARSHQ5FYA8 562 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 TMEM240Q5SV17 173 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 CDCA2Q69YH5 1023 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-218ENST00000555213 CNNM4Q6P4Q7 775 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 OTOP2Q7RTS6 562 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 CATSPER4Q7RTX7 472 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 IFNLR1Q8IU57 520 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-218ENST00000555213 TDHQ8IZJ6 230 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 RNF214Q8ND24 703 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 DBF4BQ8NFT6 615 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 TMEM40Q8WWA1 233 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 HERVK_113Q902F9 699 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 DDX12PQ92771 950 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 DNAJC19Q96DA6 116 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.02□□□□□ -0.498e-8■□□□□ 11.3
SHMT2-218ENST00000555213 AGO3Q9H9G7 860 aaKnown RBP12.02□□□□□ -0.49
SHMT2-218ENST00000555213 CDHR5Q9HBB8 845 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 IFT122Q9HBG6 1241 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 CBX8Q9HC52 389 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 ERVK-5Q9HDB9 667 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 KMT5AQ9NQR1 393 aa12.02□□□□□ -0.49
SHMT2-218ENST00000555213 RNF216Q9NWF9 866 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-218ENST00000555213 HOOK1Q9UJC3 728 aaKnown RBP12.02□□□□□ -0.49
SHMT2-218ENST00000555213 NOC2LQ9Y3T9 749 aaKnown RBP12.02□□□□□ -0.49
SHMT2-218ENST00000555213 MKI67P46013 3256 aaKnown RBP12.02□□□□□ -0.49
SHMT2-218ENST00000555213 NPHP3-ACAD11A0A0J9YXS1 232 aa12.01□□□□□ -0.49
SHMT2-218ENST00000555213 AP5Z1O43299 807 aa12.01□□□□□ -0.49
SHMT2-218ENST00000555213 AMHP03971 560 aa12.01□□□□□ -0.49
SHMT2-218ENST00000555213 MYL1P05976 194 aa12.01□□□□□ -0.49
SHMT2-218ENST00000555213 IDEP14735 1019 aa12.01□□□□□ -0.49
SHMT2-218ENST00000555213 CD44P16070 742 aaKnown RBP12.01□□□□□ -0.49
SHMT2-218ENST00000555213 ZSCAN20P17040 1043 aaPredicted RBP12.01□□□□□ -0.49
SHMT2-218ENST00000555213 NPTX2P47972 431 aa12.01□□□□□ -0.49
SHMT2-218ENST00000555213 MRE11P49959 708 aa12.01□□□□□ -0.49
SHMT2-218ENST00000555213 PEX3P56589 373 aa12.01□□□□□ -0.49
SHMT2-218ENST00000555213 ASIC1P78348 528 aa12.01□□□□□ -0.49
SHMT2-218ENST00000555213 CACNB1Q02641 598 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms