RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 FRMD4BQ9Y2L6 1034 aa14.85□□□□□ -0.03
VPS33A-208ENST00000543633 IGSF9BQ9UPX0 1349 aa14.84□□□□□ -0.03
VPS33A-208ENST00000543633 KIAA0391O15091 583 aaKnown RBP14.84□□□□□ -0.03
VPS33A-208ENST00000543633 CLIC2O15247 247 aa14.84□□□□□ -0.03
VPS33A-208ENST00000543633 NPM3O75607 178 aaKnown RBP14.84□□□□□ -0.03
VPS33A-208ENST00000543633 MTA2O94776 668 aa14.84□□□□□ -0.03
VPS33A-208ENST00000543633 NBPF9Q3BBW0 867 aa14.84□□□□□ -0.03
VPS33A-208ENST00000543633 PREPLQ4J6C6 727 aaPredicted RBP14.84□□□□□ -0.03
VPS33A-208ENST00000543633 CERS5Q8N5B7 392 aa14.84□□□□□ -0.03
VPS33A-208ENST00000543633 UBL4BQ8N7F7 174 aa14.84□□□□□ -0.03
VPS33A-208ENST00000543633 CCT6BQ92526 530 aa14.84□□□□□ -0.03
VPS33A-208ENST00000543633 RPS6KC1Q96S38 1066 aa14.84□□□□□ -0.03
VPS33A-208ENST00000543633 HSD17B14Q9BPX1 270 aa14.84□□□□□ -0.03
VPS33A-208ENST00000543633 MTRF1LQ9UGC7 380 aaKnown RBP14.84□□□□□ -0.03
VPS33A-208ENST00000543633 ATP8A1Q9Y2Q0 1164 aa14.84□□□□□ -0.03
VPS33A-208ENST00000543633 P4HA2O15460 535 aa14.83□□□□□ -0.03
VPS33A-208ENST00000543633 MAP2K2P36507 400 aa14.83□□□□□ -0.03
VPS33A-208ENST00000543633 SCTRP47872 440 aa14.83□□□□□ -0.03
VPS33A-208ENST00000543633 PPP2R5CQ13362 524 aa14.83□□□□□ -0.03
VPS33A-208ENST00000543633 SNCBQ16143 134 aa14.83□□□□□ -0.03
VPS33A-208ENST00000543633 C6orf118Q5T5N4 469 aa14.83□□□□□ -0.03
VPS33A-208ENST00000543633 SYDE2Q5VT97 1194 aa14.83□□□□□ -0.03
VPS33A-208ENST00000543633 ZDHHC24Q6UX98 284 aa14.83□□□□□ -0.03
VPS33A-208ENST00000543633 TMEM179Q6ZVK1 233 aa14.83□□□□□ -0.03
VPS33A-208ENST00000543633 ANKS4BQ8N8V4 417 aa14.83□□□□□ -0.03
VPS33A-208ENST00000543633 CCDC197Q8NCU1 140 aa14.83□□□□□ -0.03
VPS33A-208ENST00000543633 ZNF317Q96PQ6 595 aaPredicted RBP14.83□□□□□ -0.03
VPS33A-208ENST00000543633 DNAJC18Q9H819 358 aa14.83□□□□□ -0.03
VPS33A-208ENST00000543633 BCRP11274 1271 aa14.83□□□□□ -0.04
VPS33A-208ENST00000543633 ALAS1P13196 640 aa14.83□□□□□ -0.04
VPS33A-208ENST00000543633 CTNNA2P26232 953 aa14.83□□□□□ -0.04
VPS33A-208ENST00000543633 PTGIRP43119 386 aa14.83□□□□□ -0.04
VPS33A-208ENST00000543633 SLMAPQ14BN4 828 aa14.83□□□□□ -0.04
VPS33A-208ENST00000543633 CYP1B1Q16678 543 aa14.83□□□□□ -0.04
VPS33A-208ENST00000543633 WLSQ5T9L3 541 aa14.83□□□□□ -0.04
VPS33A-208ENST00000543633 CYB5D1Q6P9G0 228 aa14.83□□□□□ -0.04
VPS33A-208ENST00000543633 DNAAF5Q86Y56 855 aa14.83□□□□□ -0.04
VPS33A-208ENST00000543633 PARP9Q8IXQ6 854 aa14.83□□□□□ -0.04
VPS33A-208ENST00000543633 FUKQ8N0W3 1084 aa14.83□□□□□ -0.04
VPS33A-208ENST00000543633 MYCT1Q8N699 235 aa14.83□□□□□ -0.04
VPS33A-208ENST00000543633 ZKSCAN4Q969J2 545 aaPredicted RBP14.83□□□□□ -0.04
VPS33A-208ENST00000543633 MRIQ9BWK5 157 aa14.83□□□□□ -0.04
VPS33A-208ENST00000543633 PDGFDQ9GZP0 370 aaPredicted RBP14.83□□□□□ -0.04
VPS33A-208ENST00000543633 MYH11P35749 1972 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 IGLV3-22A0A075B6J6 115 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 PPEF1O14829 653 aaPredicted RBP14.82□□□□□ -0.04
VPS33A-208ENST00000543633 CAND2O75155 1236 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 CYP4A11Q02928 519 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 CTTNQ14247 550 aaKnown RBP14.82□□□□□ -0.04
VPS33A-208ENST00000543633 PTPROQ16827 1216 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 CERKLQ49MI3 558 aaPredicted RBP14.82□□□□□ -0.04
VPS33A-208ENST00000543633 APOBEC3HQ6NTF7 200 aaKnown RBP14.82□□□□□ -0.04
VPS33A-208ENST00000543633 TATDN1Q6P1N9 297 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 PLCD3Q8N3E9 789 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 ATXN2LQ8WWM7 1075 aaKnown RBP14.82□□□□□ -0.04
VPS33A-208ENST00000543633 ARHGEF26Q96DR7 871 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 FIZ1Q96SL8 496 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 AGPAT1Q99943 283 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 NSRP1Q9H0G5 558 aaKnown RBP14.82□□□□□ -0.04
VPS33A-208ENST00000543633 AGPAT3Q9NRZ7 376 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 GRHL1Q9NZI5 618 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 USP20Q9Y2K6 914 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 COL11A2P13942 1736 aaPredicted RBP14.82□□□□□ -0.04
VPS33A-208ENST00000543633 DCDC2CA8MYV0 355 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 F8W031 263 aaPredicted RBP14.82□□□□□ -0.04
VPS33A-208ENST00000543633 EML1O00423 815 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 DNM1LO00429 736 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 CTNND1O60716 968 aaKnown RBP14.82□□□□□ -0.04
VPS33A-208ENST00000543633 SLC8A1P32418 973 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 ICA1Q05084 483 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 KCNA1Q09470 495 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 BFSP1Q12934 665 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 ALCAMQ13740 583 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 NEDD9Q14511 834 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 TNFAIP8L3Q5GJ75 292 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 MFSD5Q6N075 450 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 ZNF720Q7Z2F6 126 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 HVCN1Q96D96 273 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 ZDHHC15Q96MV8 337 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 ZSWIM1Q9BR11 485 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 THAP2Q9H0W7 228 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 WNT8AQ9H1J5 351 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 TAOK3Q9H2K8 898 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 ERVK-5Q9HDB9 667 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 PNMA2Q9UL42 364 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 NR2E1Q9Y466 385 aa14.82□□□□□ -0.04
VPS33A-208ENST00000543633 COL2A1P02458 1487 aaPredicted RBP14.81□□□□□ -0.04
VPS33A-208ENST00000543633 CCT8L1PA6NM43 557 aa14.81□□□□□ -0.04
VPS33A-208ENST00000543633 RGS16O15492 202 aaPredicted RBP14.81□□□□□ -0.04
VPS33A-208ENST00000543633 C21orf2O43822 256 aa14.81□□□□□ -0.04
VPS33A-208ENST00000543633 PSMD10O75832 226 aa14.81□□□□□ -0.04
VPS33A-208ENST00000543633 MMEP08473 750 aa14.81□□□□□ -0.04
VPS33A-208ENST00000543633 ABCB4P21439 1286 aa14.81□□□□□ -0.04
VPS33A-208ENST00000543633 NMT1P30419 496 aaKnown RBP14.81□□□□□ -0.04
VPS33A-208ENST00000543633 ZNF76P36508 570 aa14.81□□□□□ -0.04
VPS33A-208ENST00000543633 PRPF4BQ13523 1007 aaKnown RBP14.81□□□□□ -0.04
VPS33A-208ENST00000543633 CBWD6Q4V339 395 aa14.81□□□□□ -0.04
VPS33A-208ENST00000543633 CBWD3Q5JTY5 395 aa14.81□□□□□ -0.04
VPS33A-208ENST00000543633 CBWD5Q5RIA9 395 aa14.81□□□□□ -0.04
VPS33A-208ENST00000543633 SEL1L2Q5TEA6 688 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms